LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g07207	ATGGATCTTCTATGTGCCGCATATTCAAATACTGAAGAAGAAGAAGAAGAACCCAAACGAATGAAATTATCCCACCATACTCCCACACCGAAACCCTATATCCCTTCTTCTACTACTGTTTCCAACCCCCATTCACAAATTCTCATTCCAGGTAGCTACGTTTCCAAACGACAACGCGCTTCTATGCCTTCCATCACTTCTGCTACATCTATTCCTCACCTTTCATCATCTCCGTCTTTCACATTATCCGGCAGTATCTCGGAGGTTGATATACACCATAACATTTTAGCATTGTTGAGAAGTGAAGCAAAGGATCATAAAAACCTAAACTCGGTATCTGAAAAGCTATCTGCATCTTTATCTGGACATACAAGAGCTGTCAATGCTATACATTGGTCATCAACGCACGCTCACCTCCTCGCATCTGCTGGGATGGACAATTTGGTATGCATATGGAACGTATGGAGCAGAGATAAGAAGAAAGCATGTGCGCTAAACTTCCACAACGCTGCTGTGAAAGATGTGAAATGGTCTCAACAAGGGCACTTCTTACTTTCTTGTGGATATGATTACACATCAAGGTTGGTTGATGTTGTAAAGGGGATGGAAACTCAGGTTTTCAGAGAAGATCAAATGGTTGGAGTTATAAAGTTCCACCCAGACAATTCAAATCTCTTCCTTTCTGGGGGATCTAAAGGGCATATCAAACTATGGGATATCAGAACTGACAAAGTTGTGCATAACTATAATCGAAATTTAGGTTCCATTCTAGATGTTGAGTTTGCAACGAACGGGAAACAATTCATTTCTTCTAGTGATGTATCTGGGAGCAATATCAGTGAGAATTCTATTATCGTTTGGGATGTGTCGAGACAGGTGCCGTTGTCTAATCAGGTTTATGTGGAAGCTTATACTTGTCCTTGCGTTAGGTCCCACCCCTTTGATCCAGTTTTTGTTGCTCAATCAAACGGTAATTATGTCGCACTCTTTAGTTCAACCCCTCCATACAGACTCAACAAATATAAGAGATATGAAAACCATGGGGTTTCTGGGTTCCATATTAAGTGCAACTTCAGCTTGGATGGAAAAAAGCTTGCATCTGGCTCTTCAGATGGATCTATTTACATATATGATTATCACTCATCCAAAGTAATTAAGAAAATAAAGGCCTTTGGTCAAGCATGCATGGACATTGCCTTCCATCCAGTTATGCCTGATGTTTTTGCTTCGTGCTCATGGGATGGAAGTATTTCGGTATTCGAGTAG	1266	0.4084	MDLLCAAYSNTEEEEEEPKRMKLSHHTPTPKPYIPSSTTVSNPHSQILIPGSYVSKRQRASMPSITSATSIPHLSSSPSFTLSGSISEVDIHHNILALLRSEAKDHKNLNSVSEKLSASLSGHTRAVNAIHWSSTHAHLLASAGMDNLVCIWNVWSRDKKKACALNFHNAAVKDVKWSQQGHFLLSCGYDYTSRLVDVVKGMETQVFREDQMVGVIKFHPDNSNLFLSGGSKGHIKLWDIRTDKVVHNYNRNLGSILDVEFATNGKQFISSSDVSGSNISENSIIVWDVSRQVPLSNQVYVEAYTCPCVRSHPFDPVFVAQSNGNYVALFSSTPPYRLNKYKRYENHGVSGFHIKCNFSLDGKKLASGSSDGSIYIYDYHSSKVIKKIKAFGQACMDIAFHPVMPDVFASCSWDGSISVFE	421

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g07207	421	ProSiteProfiles	Trp-Asp (WD) repeats profile.	206	248	IPR001680	GO:0005515
	Vivi1g07207	421	Gene3D	-	97	421	IPR015943	GO:0005515
	Vivi1g07207	421	ProSiteProfiles	Trp-Asp (WD) repeats profile.	358	387	IPR001680	GO:0005515
	Vivi1g07207	421	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	120	154	-	-
	Vivi1g07207	421	PANTHER	TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN	22	421	-	-
	Vivi1g07207	421	SUPERFAMILY	WD40 repeat-like	101	420	IPR036322	GO:0005515
	Vivi1g07207	421	SMART	WD40_4	158	197	IPR001680	GO:0005515
	Vivi1g07207	421	SMART	WD40_4	381	421	IPR001680	GO:0005515
	Vivi1g07207	421	SMART	WD40_4	242	288	IPR001680	GO:0005515
	Vivi1g07207	421	SMART	WD40_4	200	239	IPR001680	GO:0005515
	Vivi1g07207	421	SMART	WD40_4	339	378	IPR001680	GO:0005515
	Vivi1g07207	421	SMART	WD40_4	113	153	IPR001680	GO:0005515
	Vivi1g07207	421	MobiDBLite	consensus disorder prediction	8	42	-	-
	Vivi1g07207	421	Pfam	WD domain, G-beta repeat	216	239	IPR001680	GO:0005515
	Vivi1g07207	421	Pfam	WD domain, G-beta repeat	115	153	IPR001680	GO:0005515
	Vivi1g07207	421	Pfam	WD domain, G-beta repeat	345	378	IPR001680	GO:0005515
	Vivi1g07207	421	Pfam	WD domain, G-beta repeat	167	195	IPR001680	GO:0005515
	Vivi1g07207	421	ProSitePatterns	Trp-Asp (WD) repeats signature.	140	154	IPR019775	-
	Vivi1g07207	421	ProSiteProfiles	Trp-Asp (WD) repeats profile.	120	154	IPR001680	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g07207	Vivi-Chr1	177476528	177485317	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g07207	2	332	U-box Gene Family	AT2G33340	22.432	1.38e-10	61.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g07207	K24742		-	gmx:100790592	634.409