Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07198 ATGAAGGTGATAGCCGCATACTTGCTCGCCGTTCTCGGAGGCAACAACACCCCCTCCGCCAAAACCATCAAGGACATCCTTGGCTCCGTTGGAGCAGAAGCAGAAGATGGTAACATTGAATTGTTTTTGTCTGAAATCAAGGGCAAAGATATTGCTGAGGTGATTGCTTCTGGTAGGGAAAAGTTGGCATCAGTACCTGCTGGTGGTGGTGGCGGTGTTGCTGCTGCTGCACCAGCTAGTGGTGGCGGTGCTGCTCCTGCAGCTGAGGCAAAGAAAGAGGAGAAGGTGGAGGAGAAAGAGGAGTCTGATGATGATATGGGATTCAGCCTTTTTGATTAG 339 0.5074 MKVIAAYLLAVLGGNNTPSAKTIKDILGSVGAEAEDGNIELFLSEIKGKDIAEVIASGREKLASVPAGGGGGVAAAAPASGGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07198 112 CDD Ribosomal_P2 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vivi1g07198 112 Hamap 50S ribosomal protein L12 [rpl12]. 2 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vivi1g07198 112 Pfam 60s Acidic ribosomal protein 18 111 - -
Vivi1g07198 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vivi1g07198 112 Gene3D - 1 59 IPR038716 -
Vivi1g07198 112 MobiDBLite consensus disorder prediction 66 112 - -
Vivi1g07198 112 FunFam 60S acidic ribosomal protein P2 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07198 Vivi-Chr1 176838558 176840245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07198 1 112 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 67.857 2.70e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07198 K02943 - tcc:18590363 122.864
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07198 1 176838558 176840245 Vivi1g07198 1 176838558 176840245 ECH