Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07184 ATGAATAAAAGAAAAGATGGAAGGAAGAAGTTCCATGAGACACGACACCCAATATACAAAGGTGTAAGACAAAGAAACGGAAAATGGGTGTGTGAGCTACGACAACCTAACAACAAAACACGTCGTGTTTGGCTTGGAACATTTTCTCACCCCGACATGGCAGCTAAAGCTTATGATGTTGCAGCTTTAGCTTTTAGAGGTGAAGCTGCTTCCTTAAATTTTCCTAACTCAGCTACCTCTTTGCCGCGTCTTGATTCACAAACTTCTTCTATTAGGTCTATTCAGTTTGCCGCGGTGAAAGCGGGTGAGAGACACTTCTCGTCTTGTGAGAGCTCTGAACCATTCTTTGCTGAGGTCGCTGAGAATGGTTCAGAGTCTTTAGATTCTGGAGGGTTGTTTTGGGATGAGGAGGAGGTTTTCAACATGCCGGGATTGATAAACAGTATGGCGGAAGGGTTGGTTATGACACCACCGGCGTTGCAGAGAGGGTTCAATTGGGTTGATGGGGAAACTACCATGGACTTAACTTTATGGAAAAATTGA 543 0.442 MNKRKDGRKKFHETRHPIYKGVRQRNGKWVCELRQPNNKTRRVWLGTFSHPDMAAKAYDVAALAFRGEAASLNFPNSATSLPRLDSQTSSIRSIQFAAVKAGERHFSSCESSEPFFAEVAENGSESLDSGGLFWDEEEVFNMPGLINSMAEGLVMTPPALQRGFNWVDGETTMDLTLWKN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07184 180 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Vivi1g07184 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 179 IPR045277 GO:0003700
Vivi1g07184 180 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Vivi1g07184 180 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Vivi1g07184 180 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Vivi1g07184 180 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vivi1g07184 180 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Vivi1g07184 180 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vivi1g07184 180 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07184 Vivi-Chr1 175947657 175948379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07184 3 178 AP2-EREBP Transcription Factor Family AT4G25490 45.902 6.13e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g07184 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07184 - - vvo:131659871 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07184 1 175947657 175948379 Vivi1g07184 1 175947657 175948379 ECH
Vivi1g07184 1 175947657 175948379 Vivi6g05794 6 164744190 164745533 PCT