Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07174 ATGGAGGAAAAAACTATTTGTTTTGATAAAGAGTTGCAAAGGGAGATTGAAGACATAATGGTTGGTAGAGGTCCTTTATTTGGGAACCTTCAATGGAAAATATTGATACATACATATTACAACTACTACATAAACAATATGAATAAAAGAAAAGATGGAAGGAAGAAGTTCCATGAGACACGACACCCAATATACAAAGGTGTAAGACAAAGAAATGGAAAATGGGTGTGTGAGCTACGACAACCTAACAACAAAACACGTCGTGTTTGGCTTGGAACATTTTCTCACCCCGACATGGCAGCTAAAGCTTATGATGTTGCAGCTTTAGCTTTTAGAGGTGAAGCTGCTTCCTTAAATTTTCCTAACTCAGCTACCTCTTTGCCGCGTCTTGATTCACAAACTTCTTCTATTAGGTCTATTCAGTTTGCCGCGGTGAAAGCGGGTGAGAGACACTTCTCGTCTTGTGAGGGCTCTGAACCATTCTTTGCTGAGGCCGCCGAGAATGGTTCAGAGTCTTTAGATTCTGGAGGGTTGTTTTGGGACGAGGAGGAGGTTTTCAACATGCCGGGATTGATAAACAGTATGGCGGAAGGGTTGGTTATGACACCACCGGCGTTGCAGAGAGGGTTCAATTGGGTTGATGGGGAAACTACCATGGACTTAACTTTATGGAAAAATTGA 681 0.42 MEEKTICFDKELQREIEDIMVGRGPLFGNLQWKILIHTYYNYYINNMNKRKDGRKKFHETRHPIYKGVRQRNGKWVCELRQPNNKTRRVWLGTFSHPDMAAKAYDVAALAFRGEAASLNFPNSATSLPRLDSQTSSIRSIQFAAVKAGERHFSSCEGSEPFFAEAAENGSESLDSGGLFWDEEEVFNMPGLINSMAEGLVMTPPALQRGFNWVDGETTMDLTLWKN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07174 226 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Vivi1g07174 226 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vivi1g07174 226 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Vivi1g07174 226 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Vivi1g07174 226 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Vivi1g07174 226 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Vivi1g07174 226 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Vivi1g07174 226 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Vivi1g07174 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 46 225 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07174 Vivi-Chr1 175246633 175248647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07174 49 224 AP2-EREBP Transcription Factor Family AT4G25490 46.486 4.71e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi1g07174 AP2 4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07174 - - vvo:131659871 471.47