Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07172 ATGGCTCAGAAGCACTTACACGAGCTACTTCAAGAAGATCAAGAGCCATTTCTTCTAAACAACTACATTTCAGATAGACTTACCCAACTCAAAAGACTTACACCAAACAACACTTTACAATTGAAGAAACATGAACATAAACCAACAACAAACGTTAACTTCTGCAAACACGCTTGTTTTTTCTCATTCCAAAACACACCGGATATAAGAAACTCACCGCTCAAAAGCCCGGTCAGATCCTCTAATGATCTCTTCCTCCAAATCCCAGCCAAAACGGCGTCGGTTTTACTCGACGCCGCTCTCAAAATCCACAACAAGAAACCCCATTGCAAAAACAAAAACAAAAACAAATCTTTCGGGGTTTTCGGTTCGTTTTTCAAGAAACTAACGCAACGAAGCAAAACCAAAACTGAAGGTGATGTTTCTGTGAAGGATATTTTGAGGTGGGATTCAAGAAATAGGAAATCTTTCAACAAAGGTGGCACTGAGGTGTGTTCGTTTGAGGTGGGGTTCACGTGTTCTTGCAATGGAAGACATAGCAGTAGCGCCGTATGGTCTGAGAGCAACGAAGCAGAAACTTCGAGTAGTGGCCATTCACATTCTTGTGACTCAGTGGAAGAGGTTGAGTTTGCGATGATGAACACGAAGAAACAAAATGTAGCAGATTGCGGTTGCTTTGATCAGCATGGGTTTTTCTGCGAAAGCCCTTTCCGTTTCATTCTCGAAAAGAGTCCCTCCACTTCCGGCCGTCGTACGCCGGAGTTTTCTTCGCCGGTGGAGTCACCTAGCCGCCACCAACCTGAGGACAAACAAAATAATGGAGTTGATGATGTTAAGAAATTCGAATCAGGAGAAGATGAAGAAGAGAAAGAACAATGTAGTCCAGTATCTGTTTTAGATACTCCTTTTGAAGATTATCATGATGATGATGATTGCCATGAAAATGACGATGAAGAAGATGATTTTGATTTGGACGGTAGCTACGCCAATGTACAAAGGACCAAGCAACAACTATTAGACCGGCTTCGAAGATTTGAGCAACTTGCGGAGTTAGATCCACTAGAACTTGAAAAAAGAATGCAAGAAGACAACGAGGAAACATTTTTCGAAGAGGATGATGATGAAGAAGATTGTGAAGAAAAGAGTCTTAGAGAAATGGTTTGTGATATACTCTGCCATTCAAGTAATCATGAAAGATGGCAAGAGCAAGAAGTTCTTAAGAGACTTGTTTATGATCTCATTAAGGAGGAACTCAATTATTCACAAGATATGAACTATGTAGTGAAAAGGGTATGCAAGAAGATGGAATTGTGGAAAGAAGTGGAATGTGACACTATTGATATGATGATAGAAGAGGATTTCTCTAGAGAGGAAATTGGGTGGAAGAAAAATGATGAGGTGACTAAAGAGTTGGCTAGAGAGGTTGAGGTTTCTATTTTTTGTTTTCTTGTTGATGAATTTTCAGAGGAATTAGTATGTTAA 1482 0.4015 MAQKHLHELLQEDQEPFLLNNYISDRLTQLKRLTPNNTLQLKKHEHKPTTNVNFCKHACFFSFQNTPDIRNSPLKSPVRSSNDLFLQIPAKTASVLLDAALKIHNKKPHCKNKNKNKSFGVFGSFFKKLTQRSKTKTEGDVSVKDILRWDSRNRKSFNKGGTEVCSFEVGFTCSCNGRHSSSAVWSESNEAETSSSGHSHSCDSVEEVEFAMMNTKKQNVADCGCFDQHGFFCESPFRFILEKSPSTSGRRTPEFSSPVESPSRHQPEDKQNNGVDDVKKFESGEDEEEKEQCSPVSVLDTPFEDYHDDDDCHENDDEEDDFDLDGSYANVQRTKQQLLDRLRRFEQLAELDPLELEKRMQEDNEETFFEEDDDEEDCEEKSLREMVCDILCHSSNHERWQEQEVLKRLVYDLIKEELNYSQDMNYVVKRVCKKMELWKEVECDTIDMMIEEDFSREEIGWKKNDEVTKELAREVEVSIFCFLVDEFSEELVC 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07172 493 MobiDBLite consensus disorder prediction 243 325 - -
Vivi1g07172 493 MobiDBLite consensus disorder prediction 263 294 - -
Vivi1g07172 493 Coils Coil 328 348 - -
Vivi1g07172 493 MobiDBLite consensus disorder prediction 243 262 - -
Vivi1g07172 493 PANTHER OS04G0572500 PROTEIN 1 491 - -
Vivi1g07172 493 MobiDBLite consensus disorder prediction 309 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07172 Vivi-Chr1 175221794 175224865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07172 2 330 TRM (TON1 Recruiting Motif) Superfamily AT5G03670 38.070 2.50e-49 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07172 - - gmx:100782984 441.425