Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07161 ATGGAGAATTTGCGAAGACCGATTGATAGATCCAAAGAACCGATTTTGAAGCGACCCAGATTGATAAAAGATCCGCGACATGCGGAATCGAGTGCTCCGATGTTTCCACAGAGACAACAGCAAGTTACTTCTGCTTCACGGTTCAGACAGAATGATACAGATGTGGAAAATAATGAAGATGGTTACCAGCCTCAGCCGCTGCCGTTTCAGGAGCTTGTGGCGCAGTATAAGAGTGGGCTTGCGGAGCTGACTTTCAATTCGAAACTGATAATTAACAACCTGACTAGAATTGCGGACGAAAATCGAGCTGCTGAGAAGGCTATTGCTGCTACTATATGTGCTAACATTCTAGAGGTTCCTAGTGAACAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATTCTTTGCTGCCAAACTACCCGAGGTGTTCTGCAAGGCATACAAACAGGTTGAACCTCCTGTCCGTCAAAGTATGAAACACCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGGCTATAGACAAAGAACTAGGCTTCACTCCAGCAGTCAATGGTTCGTCTTCAGCATCTGCTGCACTCAGGAGTGATTCACAGACACATCATCCATCTCACAGTATACATGTGAATCCCAAGTATTTTGAGAGACAGCGTGTTCAGGAGTCCAGCAGGAGTAATCAGCACACTCATAGAGACCCATTCAATGACCCTGTTCCAGAAAAGAGCATCAGTGCATCCTATGGAGGCGGTGAACATGGTTCCAATCTCTCAAGGAATATGGGCATGGGTATTGGCAGAACTGATGGCAGCATAACTGAGTTAGGACACCGCAATTTGTACAACAAAGCTGCTGGTGTTTCAGGGACCATATCTGGGCAAAGAAATGGTGTTGGCCTGAAGCATAGTTTTTCAAATACTGAAGCTACTACTATTTCGGATGCACAACATCAGCCAACACGAAACATAACTGGCATAAAGAGAAATGCAATGTCAAATAGCTGGAAAAATTCCGAGGAAGAGGAGTACATGTGGGATGACATGAACATTGGATTGACTAGTCATGGTGTCCGTAACAACTTGGGCAATGATGCTTGGACTGCTGATGATGAGAATTTGGACGCTGAAGAGAACCACCACCAAATCAGAAATGTTTTTGGGACAAATGTTGATAGAGAAATGACCAATAGATCTCAAGCCACTCAAAAGAAACAATTTCGGCATCATCCGTCGTTATCATGGAAATTGCAGGAGCATCAATCAATTGATGAATTGGATCAGGAATTGGGTCCCTCGGATGGATGTATGTCAATCTCTGGTTCCTTACTAGGCAATGCAAATTCTTCTGCTGCCAGGATGGGGAATCGTGCTTTCCTGCCCAATGCAAGAATTGGAGGACAACAGTTTCATTCTGTGGGATCTGAATCCATTTCAGGGCAGTCACCTTTGCGACAACGCTCTCCTTCGCCACCAAGTATCGACCACTCTCATCTAATAGAAAATTTCGATAAGCAAGACCATCCTCACAGTCGTAAAACATCTCAGTTTTTGGGAGGCCTGCAAAGCAAATATATTAAAGATTCTTCACCCACCCTTTCTCCTAATATTCAGGTTGGAGACTTGCGAAGATCATCACAGGTAAAAGACTTGCAGGGTCCATTACCTTCAGCGAGTTTTCAGCCAAGGTATCAGCAACAACTGAGCGCTTCTCCCACTGAAGTAAATGTTAAGACTAAGAAGCTACCCTTGTCCAATGTTTCTTTAGCCCGAGAAACCTCAGAGCAGCCAGCCACAAGTCATACAGAAATTGCAAGTGTGAAGAGTAGACTATTCTCCAACATGCCAATTACTAGTAATCTTCCATCTCTATTAGGGTCTCGGCCTTCTCAGTCAGGCGGTTCTTCCCCTGCCACATTAATTTCTTCAGTGTCTGCCAATGCTTCTCCATCTTCATCTGCTTTGCCAAAAAGACCTCAAAGAAAGGCTGGACAATCAATAAGGACATCTACTCTACCACCAGCTTCCTCGAATGTTAGCAGTGCCTCAGCCCAGACATTGGATGCTACAAATAAAACCTCAAATCCACTTTCAAACCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATCCACAGAAACTGAGACACCAGCTGAGGTGGTGTCTCGATCGGAAGATTACTGCGACAGCTTTAGTACCAGTAGCTCTATGCCTGTTGCTTCATTGTCTGGTTCTGCAGTTGTCCCTGTCCCTTCTACTAAAGATGAGTTAGATGATACTGCAAAAACATCTACGTCCTTATCTGAATCAACCAGCACAGATATTAGAAATGTCATTGGCTTTGAGTTTAAGCCTAATGTAATCAGAAAATTGCATCCATCTGTAATTAGTGGATTATTTGATGATTTTCCACATCATTGCAGCATTTGTGGCCTTAAGCTCAAACTCCAAGAGCAGTTTAATAGACACTTGGAGTGGCACGCCACAAGAGAAAGAGAACACAGTGGTTTAACTAAAGCATCAAGATGGTATCTGAAGTCAACTGACTGGGTTGCTGGCCAAGCTGAATGTTCATCTGAAAATGAGTTTACTGACTCTGTAGATTCACAAGACAAGGAAACAGACGAAAGTCAAGAGGATGCAATGGTTCTGGCAGATGAAAACCAGTGCTTATGTGTGCTATGTGGCGAGTTATTTGAAGATGTTTACTGTCAGGAAAATAGTGAGTGGATGTTCAAAGGGGCTGTTTACGTGACTAATTCAGATAGCGATACTGAGACGGGAATCAAAGATACGAGTTCTGGAAGGGGTCCTATCATTCACACAAGATGCTTATCAGATAACTCGTTATCGAGTGTCCTCAAGATGGAACAAGATTGA 2916 0.4338 MENLRRPIDRSKEPILKRPRLIKDPRHAESSAPMFPQRQQQVTSASRFRQNDTDVENNEDGYQPQPLPFQELVAQYKSGLAELTFNSKLIINNLTRIADENRAAEKAIAATICANILEVPSEQKLPSLYLLDSIVKNIGRDYIKFFAAKLPEVFCKAYKQVEPPVRQSMKHLFGTWKGVFPPQTLQAIDKELGFTPAVNGSSSASAALRSDSQTHHPSHSIHVNPKYFERQRVQESSRSNQHTHRDPFNDPVPEKSISASYGGGEHGSNLSRNMGMGIGRTDGSITELGHRNLYNKAAGVSGTISGQRNGVGLKHSFSNTEATTISDAQHQPTRNITGIKRNAMSNSWKNSEEEEYMWDDMNIGLTSHGVRNNLGNDAWTADDENLDAEENHHQIRNVFGTNVDREMTNRSQATQKKQFRHHPSLSWKLQEHQSIDELDQELGPSDGCMSISGSLLGNANSSAARMGNRAFLPNARIGGQQFHSVGSESISGQSPLRQRSPSPPSIDHSHLIENFDKQDHPHSRKTSQFLGGLQSKYIKDSSPTLSPNIQVGDLRRSSQVKDLQGPLPSASFQPRYQQQLSASPTEVNVKTKKLPLSNVSLARETSEQPATSHTEIASVKSRLFSNMPITSNLPSLLGSRPSQSGGSSPATLISSVSANASPSSSALPKRPQRKAGQSIRTSTLPPASSNVSSASAQTLDATNKTSNPLSNLLSSLVAKGLISTETETPAEVVSRSEDYCDSFSTSSSMPVASLSGSAVVPVPSTKDELDDTAKTSTSLSESTSTDIRNVIGFEFKPNVIRKLHPSVISGLFDDFPHHCSICGLKLKLQEQFNRHLEWHATREREHSGLTKASRWYLKSTDWVAGQAECSSENEFTDSVDSQDKETDESQEDAMVLADENQCLCVLCGELFEDVYCQENSEWMFKGAVYVTNSDSDTETGIKDTSSGRGPIIHTRCLSDNSLSSVLKMEQD 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07161 971 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 46 964 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vivi1g07161 971 MobiDBLite consensus disorder prediction 485 507 - -
Vivi1g07161 971 ProSiteProfiles CID domain profile. 68 196 IPR006569 -
Vivi1g07161 971 MobiDBLite consensus disorder prediction 204 271 - -
Vivi1g07161 971 FunFam polyadenylation and cleavage factor homolog 4 65 193 - -
Vivi1g07161 971 MobiDBLite consensus disorder prediction 1 27 - -
Vivi1g07161 971 MobiDBLite consensus disorder prediction 877 891 - -
Vivi1g07161 971 MobiDBLite consensus disorder prediction 222 251 - -
Vivi1g07161 971 SMART 558neu5 71 193 IPR006569 -
Vivi1g07161 971 MobiDBLite consensus disorder prediction 762 781 - -
Vivi1g07161 971 MobiDBLite consensus disorder prediction 525 589 - -
Vivi1g07161 971 Gene3D - 68 193 IPR008942 -
Vivi1g07161 971 MobiDBLite consensus disorder prediction 510 524 - -
Vivi1g07161 971 MobiDBLite consensus disorder prediction 33 48 - -
Vivi1g07161 971 MobiDBLite consensus disorder prediction 869 891 - -
Vivi1g07161 971 CDD CID_Pcf11 73 189 IPR047415 -
Vivi1g07161 971 MobiDBLite consensus disorder prediction 204 220 - -
Vivi1g07161 971 ProSitePatterns Zinc finger C2H2 type domain signature. 819 839 IPR013087 -
Vivi1g07161 971 MobiDBLite consensus disorder prediction 1 48 - -
Vivi1g07161 971 MobiDBLite consensus disorder prediction 485 589 - -
Vivi1g07161 971 Pfam CID domain 79 187 IPR006569 -
Vivi1g07161 971 MobiDBLite consensus disorder prediction 634 705 - -
Vivi1g07161 971 SUPERFAMILY ENTH/VHS domain 71 193 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07161 Vivi-Chr1 174705201 174712208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07161 791 956 C2H2 Transcription Factor Family AT4G04885 35.882 6.47e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07161 K14400 - gmx:100807857 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07161 1 174705201 174712208 Vivi1g07161 1 174705201 174712208 ECH