Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07157 ATGAATGTTCTTTTGTTGATGACATTTCTCATTCTTTTCTTGTGGCAGCTAAGAAGTTTGGGAAAGTTGTTTGCTTTTGCTGATATGTTTAAATGGATGTCTTATGGCCATGATGGGAAACATCCTGGTTGTGATCAGTCTTACTTTGGAAGAAGGGAATTTTCCTTCACTCTGAAAGGTGATTTTTATCTGCGTTTTCAATCGTACAACAATGCCCTCGAACTTGAAAACTCGATCAAAGATAAATGCCCTTTAAAGATTGACATTGGACCTGTCTATACAATCGATCCTGCAAAAAGGCATGCCTATGCACAGGGTGATAATAGTGTCTTCACTCCAGTTGAGAGGGAGTTGATTTTTGATATTGATATGATAGATTATGATGATGTTAGATACTGCTGCAAGGGTGCTGATGTTTGCTTGGATTGTTGGTCGTTGATGACCATAGCCATCAAAGTGATTGATACTTCCTTAAGAGGCTTAGATGCTTCACTAAAACTAAGATGCTTAAAATACACGGGGAAGGAAATAATGACTCTACCACCGGTTGACTATAGTTTCCAGCTTCCTAAATCTGAGCATCAAGGAAATTCATCATGTAAGAAAAAGAAGGAGGTGGTGATTTATATAGCACAAGGTACAAAGCCTGAGGTTTATACTCAAGAGCATGAGAAGCTTCTTGGAGATTGTGAGACTGATTGGAAATTGTTTGTGGATGGATATGATGAGGATGGAGACCGTATATATGATCCAACCAAGGGTGAGAAATGTCATCAATGCAAGTATATTATGTGTGTTTCCTCCATATTTATAGCAACAATTATTAGCATGTTTGTCAACCAGAGAGTGGGTTTGGTGGCATTGGCTGATTATGATATGCATGTAATGTATATAGATAAGACACTAATGTGTTATGGTTTAGGAATGGATAAACCAAGTGATCCGAAGGAGAAAGAGGACAAAGAAGGCGAGACGGAGGAAAAAGAAGCGCCATACATACCTCCACCACATTATAAACCACCTATCCCGTACCCTCAAAGGCTCGAGAAATCTAGAAACATAGGGCAATTTAAGAAATTTGTCGAACTTCTTAAACAATTAAACATCACAATTCCGTTTACAGAAGCCATTACCCAAATTCCCTCATATGCTAAGTTCCTAAAAGAAATCCTATCGAATAAAAAGAAATTAGAAGACAATGAGACCATAACACTCACTGCTGAATGTAGTGCAATAATTCAAAATAAAATGCCACCTAAGCTGAAAGACCCAGGAAGTTTCTCCATACCCTGCAATATAGGAAAATTTGTCATAGACAAAGCTTTATGCGACTTAGGAGCTAGTATTAGCCTAATGCCTTTGTCCATCTGCGAGAAACTAAACATGGGAGATCTAAGACCAACCAAGATGTCAGCACAACTTGCAGACCGATCTGTCAAGTATCCTGTAGGTGTTCTTGAAAATGTACCCGTCCGCATCGGACAATTCTACATCCCTACGGATTTCATAATTATGGATATAAAAGAAGACGTCAATACTCCTATAATCTTAGAAAGACCTTTCCTAGCTACCGCTGGAGCCATTATAGACGTAAAGAAAGGCAAGTTGACATTCGAAGTAGGTGAGGAGAAGGTCGAGTTTATTCTAACACAATTCCTTCAAGCCCCAACTATAGAAGATACATGTTATCTAGTGGATGTTATTGACGACTGTATAAGAGAGATAGGATTATCAGAAGAATCTTACTCTAAAGTTATAAAGATTCCGATGCCCCTGATTTACGAAGATGACAATTGGCGATCGGAATATCGAGACGATAGTTTAAGCGAATGCTTAGCTTTAACACCCAACCCTATGCCTTGCCCAAAGAAACCAGCCTTGGACCTTAAACCATTACCCAAGACTCTTAGGTATGAATATCTAGACGATGAGCTCAAAAGACCAGTAATAGTCAACGTAGAGCTAGGAGCCACAGAGACTGAGAAGCTATTACAAGTTTTAAGAAAGTATCCATCTGCGTTAGGATATAACATTGGTGATTTGAAAGGAATAAGTCCTTCCATATGTATGCATCGCATCATGTTGGAAGAAAATTGCAAAACCTCTAGGGAGCATCAAAGAAGGATTAACCCTATCCTGAGCACAGTAGTTAAAGATGAAGTTACCAAACTTCTGAATGCTGGAATTATATATCCAATTTCCGATAGTCAGTGGAGATGCATGATGTCAATTTTCGCTGATTACATAGACAACATCATAGAAGTCTTTATGGACGACTTCTCTGTGTGTGGGAAAGATTTCGAAGGATGTCTCTCAAATCTAGAAAAAGTATTGGACAGATGTGTACAAGTTAACCTCGTCCTAAACTGGGAAAAGTGTCACTTTATGGTTAAACAAGGGATTGTACTTGGACACGTAGTCTCCGAAAGAGGAATAGAAGTCGATAAAGCAAAGATCGAAGTAATAGAAAATCTCCAACCCCCAAAAACAGTTAGAGAGATAGGAAGCTTCTTAGGTCACGCAGGTTTCTACAGAATATTTATAAAGGACTTTTCTAAGATCTCTAAACCTCTGACCAGCCTCCTGATGAAAGACGTTGAGTTTAATTTCAACGATGAATGTCTAGAAGCCTTTGAAGTACTAAAGACGACCCTGATATCCGCACCCATAATGCAACCACCCGACTGGAATTTACCATTTGAAATTATGTGTGATGCAAGTGACTATGCTGTAGGAGCTGTCTTAGGCCAAAGGAAAGATAAGAAACTCCACGCAATATACTATGCAAGTAGGACCTTGGACCCTGCGCAAATGAATTACGCCACAACCGAAAAGGAACTCCTAGCCGTGGTCTTCGCGTTAGATAAGTTTCGTTCCTATCTAATAGGAGCAAAAATAATAGTTTACACCGACCTTGCAGCCATTAGGTATCTACTAGCTAAACAAGATGCAAAACCTAGACTATTAAGGTGGATCCTACTACTACAAGAATTTGATTTGGAAATCAAAGATAAAAAAGGGACCAAAAACGTTGTAGCCGACCATTTATCTAGGATGGAAGGTATTAAGACAGAAGAAACACCAATCAACAATGATTTCCCCTATGAACATTTAATATCACATTTAGAATCCAAAAGCGACACATTGGAACAACTTAAAGCGCAAACCGTTAAGACACTAAGCACCGGAACCACGCTGCCATGGTATGCCGATTTCGTCAATTACCCAGCTGCGAGAGTGCTTCCGCCTGACATGACTTACCAACAAAAGAAGAAGTTCTTCCATGACCTTAAACAGTATTATTGGGATGAACCCTTGCTATTCAAGAGAGGCGCTGATGGGATATTCCGCCGATGTGTTCCGGAAGAAGAAATAGAAAGCATAATACGTCATTGCCATAATGCCCCCTATGGTGGGCATACTAGCACATCAAAGACATGCGCTAAGATTCTGCAAGCAGGTCTCTTTTGGCCCAACCTGTGGAAGGATGTCCACATCGCTGTTAGAAACTGCGACCGATGTCAGCGCACTGGAAACATATCTAAGCGAGATGAAATGCCACAAAAGGGCATTTTAGAAGTAGAAATATTTGATGTGTGGGGAATCGATTTTATGGGACCTTTCCCATCTTCCTTTGGAAATAACTACATACTTGTCGCAATCGATTACATATCTAAATGGATAGAAGTTGTAGCCTCACCCACAAACGATGCACAAGTAGTTATTAGGATATTCAAAAATATAATCTTTCCAAGATTTGGTGTACCAAGATTAGTCATTAGCGACGGAGGATCCCACTTCATATCTAGAATTTTCGAAAAACTCTTAGTGAAATATGGAGTCCGACACCGTATAGCAACACCTTACCACCCACAAACTAGTGGACAAGTTGAAGTCTCGAATAGACAAATTAAGCAAATACTTGAAAGGACTGTTGCCACATCTAGGAAGGATTGGTCAACTAAGTTACACGAAGCACTGTGGGCGTATAGAACTGCCTACAAGACACCAATAGGAACCACGCCTTTTAAATTAGTATACGGTAAATCTTGTCATCTACCGGTGGAACTAGAGCATAAAGCCTACTGGGCAATAAAAACCTTAAACCTAAGTTACACCGCCGCAGGCGAAAGAAGGCTATTGGATATCAACAAGTTGGAAGAAATTAGATTGGATGCTTACGAGAATGCTAAGATTTACAAAGAAAGAACAAAGAAGTGGCACGATAAACGCATCTCAAGGAAGGAATTCAATGAAGGAGATGTGGTGCTACTGTTTAATTCTCGACTTAAGCTATTCCCAGGATTACTTCGTTCAAGATGGTCTGGTCCATTCGAAGTTACCAAAGTATATCCGAGTGGCGCTATAGAAATTAAAGGAAAATTGAGCGATAACTTCGTTGTAAACGGGCAGCGATTGAAACATTACCATAATGTTGAAAACAAAGACTACACTGATAGTCTTAAGCTCGTAGAGTTAATCGTCGAGTCGTAG 4494 0.397 MNVLLLMTFLILFLWQLRSLGKLFAFADMFKWMSYGHDGKHPGCDQSYFGRREFSFTLKGDFYLRFQSYNNALELENSIKDKCPLKIDIGPVYTIDPAKRHAYAQGDNSVFTPVERELIFDIDMIDYDDVRYCCKGADVCLDCWSLMTIAIKVIDTSLRGLDASLKLRCLKYTGKEIMTLPPVDYSFQLPKSEHQGNSSCKKKKEVVIYIAQGTKPEVYTQEHEKLLGDCETDWKLFVDGYDEDGDRIYDPTKGEKCHQCKYIMCVSSIFIATIISMFVNQRVGLVALADYDMHVMYIDKTLMCYGLGMDKPSDPKEKEDKEGETEEKEAPYIPPPHYKPPIPYPQRLEKSRNIGQFKKFVELLKQLNITIPFTEAITQIPSYAKFLKEILSNKKKLEDNETITLTAECSAIIQNKMPPKLKDPGSFSIPCNIGKFVIDKALCDLGASISLMPLSICEKLNMGDLRPTKMSAQLADRSVKYPVGVLENVPVRIGQFYIPTDFIIMDIKEDVNTPIILERPFLATAGAIIDVKKGKLTFEVGEEKVEFILTQFLQAPTIEDTCYLVDVIDDCIREIGLSEESYSKVIKIPMPLIYEDDNWRSEYRDDSLSECLALTPNPMPCPKKPALDLKPLPKTLRYEYLDDELKRPVIVNVELGATETEKLLQVLRKYPSALGYNIGDLKGISPSICMHRIMLEENCKTSREHQRRINPILSTVVKDEVTKLLNAGIIYPISDSQWRCMMSIFADYIDNIIEVFMDDFSVCGKDFEGCLSNLEKVLDRCVQVNLVLNWEKCHFMVKQGIVLGHVVSERGIEVDKAKIEVIENLQPPKTVREIGSFLGHAGFYRIFIKDFSKISKPLTSLLMKDVEFNFNDECLEAFEVLKTTLISAPIMQPPDWNLPFEIMCDASDYAVGAVLGQRKDKKLHAIYYASRTLDPAQMNYATTEKELLAVVFALDKFRSYLIGAKIIVYTDLAAIRYLLAKQDAKPRLLRWILLLQEFDLEIKDKKGTKNVVADHLSRMEGIKTEETPINNDFPYEHLISHLESKSDTLEQLKAQTVKTLSTGTTLPWYADFVNYPAARVLPPDMTYQQKKKFFHDLKQYYWDEPLLFKRGADGIFRRCVPEEEIESIIRHCHNAPYGGHTSTSKTCAKILQAGLFWPNLWKDVHIAVRNCDRCQRTGNISKRDEMPQKGILEVEIFDVWGIDFMGPFPSSFGNNYILVAIDYISKWIEVVASPTNDAQVVIRIFKNIIFPRFGVPRLVISDGGSHFISRIFEKLLVKYGVRHRIATPYHPQTSGQVEVSNRQIKQILERTVATSRKDWSTKLHEALWAYRTAYKTPIGTTPFKLVYGKSCHLPVELEHKAYWAIKTLNLSYTAAGERRLLDINKLEEIRLDAYENAKIYKERTKKWHDKRISRKEFNEGDVVLLFNSRLKLFPGLLRSRWSGPFEVTKVYPSGAIEIKGKLSDNFVVNGQRLKHYHNVENKDYTDSLKLVELIVES 1497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07157 1497 FunFam Transposon Tf2-6 polyprotein-like Protein 817 906 - -
Vivi1g07157 1497 Gene3D DNA primase, PRIM domain 20 174 - -
Vivi1g07157 1497 SUPERFAMILY Ribonuclease H-like 1196 1344 IPR012337 -
Vivi1g07157 1497 MobiDBLite consensus disorder prediction 313 333 - -
Vivi1g07157 1497 ProSiteProfiles Integrase catalytic domain profile. 1183 1350 IPR001584 GO:0015074
Vivi1g07157 1497 Pfam Integrase zinc binding domain 1120 1177 IPR041588 -
Vivi1g07157 1497 Gene3D Acid Proteases 405 553 IPR021109 -
Vivi1g07157 1497 Pfam RNase H-like domain found in reverse transcriptase 870 968 IPR041577 -
Vivi1g07157 1497 Coils Coil 1035 1055 - -
Vivi1g07157 1497 Gene3D - 816 910 IPR043128 -
Vivi1g07157 1497 SUPERFAMILY Prim-pol domain 22 159 - -
Vivi1g07157 1497 SUPERFAMILY DNA/RNA polymerases 686 1002 IPR043502 -
Vivi1g07157 1497 PANTHER ENZYMATIC POLYPROTEIN-RELATED 658 1342 - -
Vivi1g07157 1497 MobiDBLite consensus disorder prediction 313 339 - -
Vivi1g07157 1497 CDD RNase_HI_RT_Ty3 901 1019 - -
Vivi1g07157 1497 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like protein 899 969 - -
Vivi1g07157 1497 Gene3D - 686 813 IPR043128 -
Vivi1g07157 1497 Pfam Integrase core domain 1198 1291 IPR001584 GO:0015074
Vivi1g07157 1497 Gene3D - 1084 1177 - -
Vivi1g07157 1497 Pfam DNA primase small subunit 120 159 IPR002755 GO:0003896|GO:0006269
Vivi1g07157 1497 CDD retropepsin_like 429 523 - -
Vivi1g07157 1497 Gene3D - 1193 1375 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07157 Vivi-Chr1 174465623 174473287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07157 21 159 Core DNA Replication Machinery Family AT5G41880 69.784 1.65e-63 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07157 - - vvo:131659784 2974.88