Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07152 ATGGAACAAACCATGAACAACAACAACAATGTTTCTTCACCTCAATCTCAACAAGTATTAACAAACCCTTTACCTCAAATCATGAACATGAATGTCGGAAGCAGTGTTAGTGTTGTTAACACTACTGGAATAACAACAACAACAACAACATCAATGGTGGTTTCTACCGTAGCAGTGTCAACAGCAGCTGCAACAACAGCAACAACAACGCCGGGAAGCAGTGGTGGAGGAAGCTTTGATTTGTTTGGGAAGAAGAAAAGAGGCAGACCAAGAAAATATGATGCTGATGGAAACCTGAATCCTAATTACAGGAAGGTTGAAAAAACACCAACAACAACAACACCATTGTTGCCACCACCACCTGGATTCACTTTGTCTTCTAATGAGTTTTCCTCCAAAAAGATCCGTGGGAAACCAACTGGGTTTGGAAATTACCAAATGCTTTCTTCTTTTGGTGAAGTGTTTGCAAGCACTGCTGCTGTGGATTTTGCACCGCATGTGGTTACAGTTTATACAGGAGAGGATGTTGGTGGGAAGATCTTGTCATTTGCACAGAAGAGTCCAAGAGCGATATGCATTCTTTCTGCCAATGGAGCTATCTCTAAAGTCACATTACGGCAACTCGGTTCTTCTGGTGGTGGTATTTTGACTTATGAGGGTCGATTTGAGATCTTATCTTTGTCTGGATCATATACGGTCTCAGACACTAGCGGCATAAGAACTCGCGATGGTGGACTGAGTGTATCACTTGCTGGTCCTGACGGCCGAGTGATTGGAGGTTCTGTTGCTGGTCTACTTACAGCTGCTGGTCCTATCCAAATTGTAGTGGGAAGTTTCACGCCAGATGGTAACAAGGCACTTAAAAAGAAGTACCAACGGGAACAAACGGTGGCGTCTCCAACTTCAACCGGTCCAGAAATGGTGACAGCAGCAAGACCTATCTCACAAGCAAATGCTCACGGAGAAAACTTTATGATACCTATTTTGTCTCAGTTACCTGATCATCAAAACCAGAGAGAATCTGTCAGCGTTTCAAGCGATAAACTGAACTTAGATGACACACCTGATGCTGCTACTTGGACCGGTTCCGACGAGTATTCAGATCAAAGAACATCTCCCGATATCAACATTTCTTTGCCGGATGAATAG 1149 0.4352 MEQTMNNNNNVSSPQSQQVLTNPLPQIMNMNVGSSVSVVNTTGITTTTTTSMVVSTVAVSTAAATTATTTPGSSGGGSFDLFGKKKRGRPRKYDADGNLNPNYRKVEKTPTTTTPLLPPPPGFTLSSNEFSSKKIRGKPTGFGNYQMLSSFGEVFASTAAVDFAPHVVTVYTGEDVGGKILSFAQKSPRAICILSANGAISKVTLRQLGSSGGGILTYEGRFEILSLSGSYTVSDTSGIRTRDGGLSVSLAGPDGRVIGGSVAGLLTAAGPIQIVVGSFTPDGNKALKKKYQREQTVASPTSTGPEMVTAARPISQANAHGENFMIPILSQLPDHQNQRESVSVSSDKLNLDDTPDAATWTGSDEYSDQRTSPDINISLPDE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07152 382 SUPERFAMILY AF0104/ALDC/Ptd012-like 163 281 - -
Vivi1g07152 382 MobiDBLite consensus disorder prediction 65 129 - -
Vivi1g07152 382 CDD DUF296 165 279 IPR005175 -
Vivi1g07152 382 ProSiteProfiles PPC domain profile profile. 160 303 IPR005175 -
Vivi1g07152 382 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 51 346 IPR039605 GO:0003680
Vivi1g07152 382 Gene3D - 165 299 - -
Vivi1g07152 382 MobiDBLite consensus disorder prediction 334 376 - -
Vivi1g07152 382 MobiDBLite consensus disorder prediction 334 382 - -
Vivi1g07152 382 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 280 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07152 Vivi-Chr1 173819283 173822187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07152 84 350 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 46.763 3.17e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07152 - - gmx:100779227 426.787