Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07146 ATGGCATCTTGCGACGACGACGATGATTTCTCTATCCTCCGTGACGATAACCACCACTCTCACCATCTCCACCAAACCTTCGCACCGCATCACCACCATCACCACCACCATTTCTCCGCCGCGTCAGTCCAATCGAAGCCCGTCGGCGACGATGATACCGATGATTACGGAAATCCGTTCGATGATGACGCCGGAAGTGAGAAACGTAAGGATCGGGATGAGATCGGCGATGGAACGACGTCGTACGGGTTTAACAAGAGGCCGAAACCGGCTTCTAGCGGAAACGGAATCGGAAACGGAGGAGTAGGAGTAGGAGCAGAGTATAGGAAGGATCGAGAGGAATGGAGTGATACAGCGATTGTTTGCTTGCTGGAAGCGTATACTGAGAAGTTCACGCAGCTGAATCGGGGGAATCTGAGGGGGAGAGATTGGGAGGAGGTAGCGTCGGTGGTTAGTGAACGGTGTGAGAATCAATCGAAGAGTGTGGAGCAGTGTAAGAACAAGGTTGATAACCTAAAGAAACGGTATAAACTGGAGAGACATAGAATGAACAATGGTTGCATCTCAGCAAGTCACTGGCCTTGGTACAAGCAGATGGAAAACATCGTCGGAAATTCTCTTCCTTCGAAGTTTGCGGACGAGGATAAGGCCATTGTTCCTGCTTCCAATTCTCCTAGGCAGTCCAAGAGATATGGAATGGCAACGTCCAGCAGTGGAGGTCAAGTAAACAGCCTTAAGTCCAAAGCATTGCCAAACCTTAGATGGCGGAGAGTTGTTCTAAAAATTAGTGGATCAGCACTTACGGGATCTGATACCTGCAATATTGACCCTAAGGTGGCCATGTTAGTTTCAAGTGAAGTTGCAATAGCTTCCCGCCTTGGTGTCGAGATAGCAATTGTTGTCGGAGGTCGTAATTTCTTCTGTGGAGATGCATGGGTAACTGCTACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGGATGATGGCTACTGTGATGAATTCGTTACTGCTCCAATCAACCCTCGAGAAGATGGGTGTTCAGACTCGTGTTCAAACTTCAGTTTCAATGCAGGAGTTTGCTGAACCATACAATAGGCAACGGGCCATCAGGCATCTTGAGAAAGGAAGAGTAGTTATATTTGGTGGCATTGGTTTTGGTGCTGGCAATCCACTTTTCTCAACCGACATAGCTGCTGCTCTTCGGGCTTCAGAAGTTAATGCTCAGGCTGTCCTCAAAGCTACTAACGTAGATGGTGTATATGACTGCAGCTCCCGAGACAGCAATTTCACTTTCGAACACATATCCTTCAGGGAGCTAGTGTCTAGAGGTGTTACCTCTATGGATATGTCAGCCTTGACATTCTGTGAGGAAAATGCCATTCCTGTTGTAGTTTTTAATCTATTGGCACCTGGGAACATCTCAAAAGCTTTATGTGGTGAACAAGTTGGCACACTAATTGACCAAACTGGAGCAATAAGCTAA 1485 0.4727 MASCDDDDDFSILRDDNHHSHHLHQTFAPHHHHHHHHFSAASVQSKPVGDDDTDDYGNPFDDDAGSEKRKDRDEIGDGTTSYGFNKRPKPASSGNGIGNGGVGVGAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVASVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISASHWPWYKQMENIVGNSLPSKFADEDKAIVPASNSPRQSKRYGMATSSSGGQVNSLKSKALPNLRWRRVVLKISGSALTGSDTCNIDPKVAMLVSSEVAIASRLGVEIAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSLLLQSTLEKMGVQTRVQTSVSMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGNPLFSTDIAAALRASEVNAQAVLKATNVDGVYDCSSRDSNFTFEHISFRELVSRGVTSMDMSALTFCEENAIPVVVFNLLAPGNISKALCGEQVGTLIDQTGAIS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07146 494 Pfam Myb/SANT-like DNA-binding domain 112 202 IPR044822 -
Vivi1g07146 494 PANTHER URIDYLATE KINASE 108 493 - -
Vivi1g07146 494 MobiDBLite consensus disorder prediction 61 77 - -
Vivi1g07146 494 MobiDBLite consensus disorder prediction 222 243 - -
Vivi1g07146 494 Pfam Amino acid kinase family 257 467 IPR001048 -
Vivi1g07146 494 Gene3D - 115 178 - -
Vivi1g07146 494 SUPERFAMILY Carbamate kinase-like 254 487 IPR036393 -
Vivi1g07146 494 MobiDBLite consensus disorder prediction 26 40 - -
Vivi1g07146 494 Coils Coil 155 182 - -
Vivi1g07146 494 MobiDBLite consensus disorder prediction 26 101 - -
Vivi1g07146 494 CDD AAK_UMPK-PyrH-Ec 256 488 IPR015963 GO:0005737|GO:0006221|GO:0033862
Vivi1g07146 494 FunFam Aspartate/glutamate/uridylate kinase family protein 115 178 - -
Vivi1g07146 494 Gene3D - 250 488 IPR036393 -
Vivi1g07146 494 Hamap Uridylate kinase [pyrH]. 253 488 IPR015963 GO:0005737|GO:0006221|GO:0033862
Vivi1g07146 494 FunFam Uridylate kinase isoform A 247 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07146 Vivi-Chr1 173457121 173461056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07146 92 206 Trihelix Transcription Factor Family AT3G14180 35.897 1.22e-16 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi1g07146 AA_kinase 4.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07146 - - gmx:100805176 791.956