Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07137 ATGGATTGGAATGGAAACACAAGAAGCTTTGTTCCTCAACATGCAGATTCTTCCTTGAGCTTTCTCTACAACTACAACTACAGCCAAACCTCATATCAAGGAATGGAAGTGAAACAGCGAGAGTGGACAGAAACATTTCCAGAAATGGACAGAATGATGATGAAATATGGGAACCAGGAAAAGAAAAAGAGATTAACTAGTGAACAGATGGAAATGCTTGAGAGTAGTTTTCAGATGGAGATAAAACTAGACCCTCACAGGAAGATGAAGCTTTCCAAAGAATTAGGGCTTCAGCCTCGGCAAATTGCTATATGGTTTCAAAATAGGCGCGCGAGGTGGAAGACAAAGCAACTTGAACACTTGTATGATTCACTTAAACACCAGTTTGAAGTTGTTTCCAAGGAAAAACAGCAGCTTCAGGATGAGGTTATGAAGTTGAAGGGGATGTTGAAAGAGCAAGGATGTTGTACTGGTAGAGTGCAAGGCTATTATACAGAAGTGTCAGTGGAAGAAACAGAAACAGTGGAAAGCACATCAGAGGGGAAGGGAAAGATTCATCATGAGTTCAACATTGGAGAGGGAAACTGTTGTTACAATTTAGAGGATTATAACATTCATAACAGTACTGTTGTGCCACTATTGCCTTACTGGCCTTCTGTTCCTTATAACTATCATTCCTGA 681 0.4023 MDWNGNTRSFVPQHADSSLSFLYNYNYSQTSYQGMEVKQREWTETFPEMDRMMMKYGNQEKKKRLTSEQMEMLESSFQMEIKLDPHRKMKLSKELGLQPRQIAIWFQNRRARWKTKQLEHLYDSLKHQFEVVSKEKQQLQDEVMKLKGMLKEQGCCTGRVQGYYTEVSVEETETVESTSEGKGKIHHEFNIGEGNCCYNLEDYNIHNSTVVPLLPYWPSVPYNYHS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07137 226 Gene3D - 55 121 - -
Vivi1g07137 226 Pfam Homeobox associated leucine zipper 116 150 IPR003106 GO:0006355|GO:0043565
Vivi1g07137 226 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Vivi1g07137 226 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Vivi1g07137 226 Coils Coil 122 142 - -
Vivi1g07137 226 CDD homeodomain 61 117 IPR001356 GO:0003677
Vivi1g07137 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 153 IPR045224 GO:0003700
Vivi1g07137 226 SUPERFAMILY Homeodomain-like 60 125 IPR009057 -
Vivi1g07137 226 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Vivi1g07137 226 SMART HOX_1 59 120 IPR001356 GO:0003677
Vivi1g07137 226 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Vivi1g07137 226 Pfam Homeodomain 61 114 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07137 Vivi-Chr1 173296208 173297663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07137 57 156 Homeobox Transcription Factor Family AT2G36610 61.111 1.68e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1g07137 Homeodomain 7.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07137 - - gmx:100778007 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07137 1 173296208 173297663 Vivi1g07137 1 173296208 173297663 ECH
Vivi6g05832 6 165844482 165846193 Vivi1g07137 1 173296208 173297663 PCT
Vivi1g07137 1 173296208 173297663 Vivi6g05830 6 165738069 165739222 PCT