Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07134 ATGGTTCTCAAGACCGAGCTCTGCCGTTTTAGTGGTGCCAAGATCTATCCCGGGAGAGGAATCAGATTTATCCGTAGTGATTCACAGGTTTTCCTTTTCGTCAATTCGAAATGCAAAAGGTACTTCCATAACAAGTTGAAGCCGTCTAAGCTTACTTGGACTGCGATGTACCGGAAGCAACATAAGAAGGACATTGCACAAGAAGCTGCAAAGAAGAGGCGTAGAGCTACCAAGAAGCCTTACTCAAGGTCAATTGTTGGTGCAACTTTGGAAGTTATTCAGAAGAAGAGATCTGAGAAGCCGGAGGTTCGTGATGCTGCCAGAGAAGCTGCTCTTCGTGAAATTAAGGAGAGGGTGAAGAAAACTAAGGATGAGAAGAAAGCAAAGAAGGCGGAAAGTCAAGCTAAGGCACAAAAGGCTGTAGGAAAAGGGAATGTTACCAAGGGTGCATCAAAAGGTCCTAAGCTTGGTGGTGGAGGTGGAAAGCGCTAA 492 0.4553 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAAKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERVKKTKDEKKAKKAESQAKAQKAVGKGNVTKGASKGPKLGGGGGKR 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07134 163 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Vivi1g07134 163 MobiDBLite consensus disorder prediction 117 136 - -
Vivi1g07134 163 MobiDBLite consensus disorder prediction 117 163 - -
Vivi1g07134 163 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Vivi1g07134 163 Gene3D - 69 139 - -
Vivi1g07134 163 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Vivi1g07134 163 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Vivi1g07134 163 FunFam 60S ribosomal protein L24 3 64 - -
Vivi1g07134 163 PANTHER 60S RIBOSOMAL PROTEIN L24 4 155 IPR000988 -
Vivi1g07134 163 MobiDBLite consensus disorder prediction 64 83 - -
Vivi1g07134 163 Coils Coil 112 136 - -
Vivi1g07134 163 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Vivi1g07134 163 SMART 4TRASH 8 46 IPR011017 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07134 Vivi-Chr1 173131286 173132667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07134 1 151 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 86.755 2.85e-85 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07134 K02896 - sly:101252133 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07134 1 173131286 173132667 Vivi1g07134 1 173131286 173132667 ECH
Vivi6g05837 6 166031306 166032885 Vivi1g07134 1 173131286 173132667 PCT