Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07115 ATGACGGATTCCGAGACAGAAACGGTGCCGGCTCCGATGTCATCACTTTTCGTCGGCGATCTTCACTCCGACGTAACCGAAGCTCACCTCCATGCGGCATTCTCCGAATTCAAGAGCCTCGCTTCCGTTCACGTCTGTAAAGACTCAGTCACCGGGAAGTCCCTCTGTTACGGTTACGTCAACCTCACCTCTCGTCAAGAAGCAATTTCTGCTATCGAGCTGAAGAATCAGTCTTTACTCAATGGAAAAGTGATAAGGGTCATGTGGTCAAGTCGTGATGTAAGGAAAAGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCGGAATCGATAGATAATGTGGGACTGCATGATTTATTTCAAGAGTATGGGAATATTTTGTCTAGCAAAATTGTCATGTCTGAAGATGGGAAGAGCAAAGGGTTTGGTTATATCCAGTTTGATTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTCAGAGATAAGCAGATATTTGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTTGCCTGAGCCTGATGCCAAATATACAAACTTGTACGTTAAGAATTTGGACCAAGATATTACTGAAGCACTTCTTAAAGAAAAGTTCTCCTCTTTTGGAAAAATTATTAGCTTGGCTATTGCAAAGGATGAGAAGGGGTTGTCAAAAGGTTTTGGATTTATGAACTATGAAAACCCGGATGATGCAAGACGTGCAACGGAAGCAATGAATGGATCACAATTTGGTTCAAAGAACTTGTATGTTGCAAGGGCACAAAAAAAGGTTGAACGTGAGAAGATCTTGCATCAGTGGTTTATGGAAAGATGCATGGAGAAAAACTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTGATGATAGTGTTAGTGACGAAGAACTAAGGGGTCAGTTTAGTGCTTGTGGCACAATAACTTCTGCAAAAGTTATGCGAGATGACAAAGGAAAAAGCAAAGGGTTTGGGTTTGTCTGTTTCTCTACCCTGGATGAGGCTGTTAAGGCTGTAAACAGTTTTCATGGGCGCATGTTCCATGGAAAACCACTGTATGTTGCTTTCGCTCAGAGGAAAGATGTTAGGCAAAGCCTATTGAAGCTCCAGCATACTCGAAAACCAGCTGGATTAGCTGGACCTACCACTGCTGTTATCCCCGGTGCACTTTCTCCTATCATCCGCACTGGTGTTGTTTATCATCATCCTATGGGTTCTACAACATTTTATCGTTCATCGGGTTCTATTATTTCCAACAAAGCTACTATGCAGCAATGGAAAAACATGAGCTGGATGATTGGCAATACAGATTCAAAAGAGTCAAGTAGTCATGCAGGACAAGCCAAGCATGTGGCCAGTGGATGGCAGCAGCAGGAGATGGGAGAAAAATCTGGAATTTCATCTGCCATGCAGTTTCTTGATCCGAAGACCCATGTTACTGGCCAGCTGGACATACTTCATTCAGATTCTATTTCAGCCGAAGTTGCTGCCATCTGA 1533 0.426 MTDSETETVPAPMSSLFVGDLHSDVTEAHLHAAFSEFKSLASVHVCKDSVTGKSLCYGYVNLTSRQEAISAIELKNQSLLNGKVIRVMWSSRDVRKSGKGNVFVKNLAESIDNVGLHDLFQEYGNILSSKIVMSEDGKSKGFGYIQFDSEESANDAIQKMNGSTVRDKQIFVGKFIRKSERSLPEPDAKYTNLYVKNLDQDITEALLKEKFSSFGKIISLAIAKDEKGLSKGFGFMNYENPDDARRATEAMNGSQFGSKNLYVARAQKKVEREKILHQWFMERCMEKNLKYKGSNIYVKNIDDSVSDEELRGQFSACGTITSAKVMRDDKGKSKGFGFVCFSTLDEAVKAVNSFHGRMFHGKPLYVAFAQRKDVRQSLLKLQHTRKPAGLAGPTTAVIPGALSPIIRTGVVYHHPMGSTTFYRSSGSIISNKATMQQWKNMSWMIGNTDSKESSSHAGQAKHVASGWQQQEMGEKSGISSAMQFLDPKTHVTGQLDILHSDSISAEVAAI 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07115 510 Gene3D - 174 283 IPR012677 -
Vivi1g07115 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Vivi1g07115 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Vivi1g07115 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Vivi1g07115 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Vivi1g07115 510 Gene3D - 102 173 IPR012677 -
Vivi1g07115 510 Gene3D - 2 101 IPR012677 -
Vivi1g07115 510 PANTHER RNA BINDING PROTEIN 15 76 - -
Vivi1g07115 510 FunFam Polyadenylate-binding protein 182 276 - -
Vivi1g07115 510 SMART rrm2_1 192 264 IPR003954 GO:0003676
Vivi1g07115 510 SMART rrm2_1 295 367 IPR003954 GO:0003676
Vivi1g07115 510 SMART rrm2_1 101 173 IPR003954 GO:0003676
Vivi1g07115 510 SMART rrm1_1 101 173 IPR000504 GO:0003723
Vivi1g07115 510 SMART rrm1_1 192 264 IPR000504 GO:0003723
Vivi1g07115 510 SMART rrm1_1 15 88 IPR000504 GO:0003723
Vivi1g07115 510 SMART rrm1_1 295 367 IPR000504 GO:0003723
Vivi1g07115 510 SUPERFAMILY RNA-binding domain, RBD 11 180 IPR035979 GO:0003676
Vivi1g07115 510 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 14 475 IPR006515 GO:0003723
Vivi1g07115 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Vivi1g07115 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Vivi1g07115 510 SUPERFAMILY RNA-binding domain, RBD 190 375 IPR035979 GO:0003676
Vivi1g07115 510 CDD RRM4_I_PABPs 293 371 - -
Vivi1g07115 510 Gene3D - 284 379 IPR012677 -
Vivi1g07115 510 FunFam Polyadenylate-binding protein 94 181 - -
Vivi1g07115 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Vivi1g07115 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07115 Vivi-Chr1 172500262 172503409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07115 14 472 Eukaryotic Initiation Factors Gene Family AT2G36660 52.229 9.90e-170 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07115 K13126 - gmx:100804671 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07115 1 172500262 172503409 Vivi1g07115 1 172500262 172503409 ECH
Vivi6g05853 6 166227791 166232662 Vivi1g07115 1 172500262 172503409 PCT