Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07097 ATGGAAACAGCAACCGCGTCGCACGATTCCGAAACCGAGAACTGCAAGCTGCAGCAGCGGCGGCGGCGAGGCGAGTTGGTCGTGAACGGTTACTTCGTGTACACACGACGCAAGAGGATCGAGCATCATTCCGACAACGAGATAGCGAAGAGACTCAGAACCGAGGAAAATGAAGAAGTTAAAGCGGAAATTGACTCCAGTGCGGCGGAGAAGAACAACGCCGTCGTTTTATGGACTTCTAAACGGCAGCGGAAACCGTCGTTTAAGCTTAAGGCTGATTCACAAGAAGATAATGCGTCTGCTGATAAGGCCGCTACTGTTTGTAATACGAAGAGCGTCGTGGCTAACGAGAAGCTAATGACTGTGAAGGAGCTCTTTGATACTGGTTTGCTCGATGGTGTTCCAGTTGTTTACGTCGGTTGCAAGAAGGAGGCTTCAGATTCGGGATTGCAAGGTGTAATTGCTGGTGGGGGGATATTGTGTTCGTGCTGTCTGTGCAATGGACGCAGAATTATTCCTCCTTCCAAATTTGAGATTCACGCCTGCAAAATATATAAGAGGGCAACGCAGTATATTTGCTTTGAAAATGGAAAGAGTCTGCTTGAACTATTGGGAGTATGCAGGACTGCTCCCTTACATACTTTGGAGGCCACCATTCAAAATTTTCTTTGTATACCGCCTGAAGAGAAGTATTTTACTTGCAGGAGCTGCAGAGGGTGTTTCCCTGTTTCAACTGTGAAAAGAGTTGGGCTTATATGCCATTCTTGTGTGGAAACAAGCAAGTCTGAAGATGGTTCTATTCGTGCAGTTGGCAAAAGAGTCAGGACTCCTCGACCATATCTGTTCTCTAGTCCATCTAGTATTTCTGAAAAGAGTATTTCTTCAAAAACTAAAAGACAACAGAAGAAGAAAACAAAGTCATCAAAACGGGTTAGCATGATAAAATCTTCCAAGAAGAGTGCTTCTGTGCCTATTATCCAGGAGAAAAGTTTGTGCAGCATGGAAACAAAGTCATCAAAACTGCTACTCAAGTTTAAGATTGCTCCAATTACATCAAATTCAAAATGTTCATCTCCACAAAATAAGAATCAGTGGAGGATCAATAAGAAGCATCAGCGATTGCATAAATTAATTTTTGAAGAAGATGGGTTGCCTGATGGAGCTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGAGGGTATCAAAAAGAAATCCGGAATTATTTGTCGATGCTGCAACACTGAGATCAGTCCCGCACAGTTTGAAATTCATGCAGGGTGGGCTTCTCGCAGGAAGCCTTATGCATACATCTACACGTCGAACGGGGTGTCTCTCCATGAGTTGGCATTATTCCTCTCAAAAGATCGCAAATGCACTGCAAAATATAATGATGATGCTTGCATTGTTTGTTGGGATGGTGGAAATCTGTTGCTCTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGTATTCCACGTCGTGGTCGGTACTGTCCAATCTGTCAACACATGTTCCTTGGAGAAGGATCTGTGGCTCTCAATCCTGATGCGGTGGCGGCTGGAAGGGTTGAAGGAGTTGATCCTATAGAACAGATTGCCAAGAGATGCATTCGGATAGTGAAAGATATTGAAGCTGAAATTGGTGGATGTGCTTTATGCAGGGGTTCTGACTTCAGCAAATCAGGTTTTGGTCCGCGCACAATAATAATATGTGATCAGTGTGAAAAGGAATATCACGTGGGCTGTTTGAGGGATCATAAAATGGCATATTTGAAGGAGTTGCCGGAAGGAGACTGGCTTTGTTGCAATGATTGCACAAGAATACATTCTATTTTGGGGAACCTTCTAGTTAGGGTGGCTGAGAGACTCCCTGAATCTCTTTTGGATATTATAAAGAAAAAGCAAGAGGAAAGATATTTGGAACCCCTTAATGAGATTGATATAAGATGGAGGCTTGTTAATGGCAAAGTTGCTTCTCCTGAAACCAGGCCATTGCTTTTAGAGGCCTTGTCAATATTTAACGAATGTTTTGATCCAATAGTTGACGTAGCTACTGAACGGGACCTTATTCCTTCTATGGTTTATGGACGGAGTTTGCAGACTCAGGATTTTGGCGGAATGTATTGTGCATTATTAATTGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGGATTTTTGGGAGAGATATTGCAGAGCTCCCTTTAATTGCTACAAGACACAAAAACCGTGGAAAGGGCTACTTCCAAACACTGTTCTCGTGCATTGAAAGGCTGCTGGCCTTCTTGAATGTGAAGAACCTTGTGCTACCAGCTGCTGAAGAAGCAGAATCCATATGGATAAATAAATTTGGGTTTAGCAGGATGAAACTTGAACAGCTTACCAACTATAGAAAGAGCTGCCAACAGATGATGGCATTCAAAGGAACGGTTATGCTTCATAAAACAGTACCTCAATGTCGGATAATCAATCGCGAGAAATGA 2505 0.4315 METATASHDSETENCKLQQRRRRGELVVNGYFVYTRRKRIEHHSDNEIAKRLRTEENEEVKAEIDSSAAEKNNAVVLWTSKRQRKPSFKLKADSQEDNASADKAATVCNTKSVVANEKLMTVKELFDTGLLDGVPVVYVGCKKEASDSGLQGVIAGGGILCSCCLCNGRRIIPPSKFEIHACKIYKRATQYICFENGKSLLELLGVCRTAPLHTLEATIQNFLCIPPEEKYFTCRSCRGCFPVSTVKRVGLICHSCVETSKSEDGSIRAVGKRVRTPRPYLFSSPSSISEKSISSKTKRQQKKKTKSSKRVSMIKSSKKSASVPIIQEKSLCSMETKSSKLLLKFKIAPITSNSKCSSPQNKNQWRINKKHQRLHKLIFEEDGLPDGAEVAYYARGQKLLEGIKKKSGIICRCCNTEISPAQFEIHAGWASRRKPYAYIYTSNGVSLHELALFLSKDRKCTAKYNDDACIVCWDGGNLLLCDGCPRAFHKECASVSSIPRRGRYCPICQHMFLGEGSVALNPDAVAAGRVEGVDPIEQIAKRCIRIVKDIEAEIGGCALCRGSDFSKSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGDWLCCNDCTRIHSILGNLLVRVAERLPESLLDIIKKKQEERYLEPLNEIDIRWRLVNGKVASPETRPLLLEALSIFNECFDPIVDVATERDLIPSMVYGRSLQTQDFGGMYCALLIVNSSVVSAGMLRIFGRDIAELPLIATRHKNRGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWINKFGFSRMKLEQLTNYRKSCQQMMAFKGTVMLHKTVPQCRIINREK 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07097 834 PANTHER AUTOIMMUNE REGULATOR 52 823 - -
Vivi1g07097 834 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g07097 834 Gene3D - 653 825 - -
Vivi1g07097 834 ProSiteProfiles Zinc finger PHD-type profile. 466 511 IPR019787 -
Vivi1g07097 834 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 553 615 - -
Vivi1g07097 834 MobiDBLite consensus disorder prediction 280 294 - -
Vivi1g07097 834 MobiDBLite consensus disorder prediction 297 313 - -
Vivi1g07097 834 SUPERFAMILY FYVE/PHD zinc finger 548 610 IPR011011 -
Vivi1g07097 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 555 615 IPR013083 -
Vivi1g07097 834 SMART PHD_3 468 509 IPR001965 -
Vivi1g07097 834 SMART PHD_3 556 613 IPR001965 -
Vivi1g07097 834 Pfam Tify domain binding domain 152 204 IPR032308 -
Vivi1g07097 834 Pfam Tify domain binding domain 405 451 IPR032308 -
Vivi1g07097 834 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 707 796 IPR016181 -
Vivi1g07097 834 SUPERFAMILY FYVE/PHD zinc finger 463 511 IPR011011 -
Vivi1g07097 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 539 IPR013083 -
Vivi1g07097 834 MobiDBLite consensus disorder prediction 278 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07097 Vivi-Chr1 171970403 171979422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07097 111 832 PHD Transcription Factor Family AT2G36720 51.696 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07097 - - gmx:100798276 1150.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07097 1 171970403 171979422 Vivi1g07097 1 171970403 171979422 ECH
Vivi6g04081 6 139045581 139056996 Vivi1g07097 1 171970403 171979422 PCT