Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07054 ATGGCGGTTCCTGGGAGGCGCAATGGTTTCAACGAAGACGACGATGAAGAATCCAACGGTATTTTCGAAGAACAATCGCTAGCTGTTGAAGAAACCGATACTCCTCCTCATCTCCGTGACCTCTCCCATGCCGCTCAAACCGGCGACCTCAACGCCCTCCGCCTCGCTCTCGATAATTTGAGTGGGAGTATTGATGAACCTCTAGAGGATGGGGATAGTGCTCTTCATTTGACTTGTTTGTACGGCCATTTTGCATGCGCCCAGCTCCTACTAGAAAGAGGAGCTGATTTGGAGGCTAAGGATGAAGATGGGGCAATTCCTTTACACGATGCATGTGCAGGAGGATTTTTGGAGATAGTCCAACTTCTACTTAACAGAGCTAATAACACTGAGCATATAAAAAGGATGTTAGAATCGGTCGATGCTGAGGGTGATACTCCTCTTCATCATGCTGCAAGAGGTGAGCATGGCGATGTAATTAGGTTGTTGCTGTCTAATGGTGCATCAGCCACAAAGGAAAACTTATATGGAAAGACCCCTGCAGAGTTACCTGACTACGGCACAAATGCTAGGACACTGCTTGAAGCTGCTGCTACTGCCATGGCAACCTAA 612 0.4788 MAVPGRRNGFNEDDDEESNGIFEEQSLAVEETDTPPHLRDLSHAAQTGDLNALRLALDNLSGSIDEPLEDGDSALHLTCLYGHFACAQLLLERGADLEAKDEDGAIPLHDACAGGFLEIVQLLLNRANNTEHIKRMLESVDAEGDTPLHHAARGEHGDVIRLLLSNGASATKENLYGKTPAELPDYGTNARTLLEAAATAMAT 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07054 203 ProSiteProfiles Ankyrin repeat profile. 143 175 IPR002110 GO:0005515
Vivi1g07054 203 ProSiteProfiles Ankyrin repeat region circular profile. 103 129 - -
Vivi1g07054 203 ProSiteProfiles Ankyrin repeat profile. 103 135 IPR002110 GO:0005515
Vivi1g07054 203 PANTHER SOWAH (DROSOPHILA) HOMOLOG 142 198 - -
Vivi1g07054 203 FunFam BRCA1-associated RING domain protein 1 35 202 - -
Vivi1g07054 203 Pfam Ankyrin repeats (3 copies) 41 101 IPR002110 GO:0005515
Vivi1g07054 203 Pfam Ankyrin repeats (3 copies) 103 172 IPR002110 GO:0005515
Vivi1g07054 203 ProSiteProfiles Ankyrin repeat region circular profile. 70 102 - -
Vivi1g07054 203 SMART ANK_2a 143 172 IPR002110 GO:0005515
Vivi1g07054 203 SMART ANK_2a 103 132 IPR002110 GO:0005515
Vivi1g07054 203 SMART ANK_2a 70 99 IPR002110 GO:0005515
Vivi1g07054 203 Gene3D - 105 196 IPR036770 -
Vivi1g07054 203 ProSiteProfiles Ankyrin repeat profile. 70 102 IPR002110 GO:0005515
Vivi1g07054 203 SUPERFAMILY Ankyrin repeat 39 183 IPR036770 -
Vivi1g07054 203 Gene3D - 29 104 IPR036770 -
Vivi1g07054 203 ProSiteProfiles Ankyrin repeat region circular profile. 143 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07054 Vivi-Chr1 169852551 169855305 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07054 24 189 Ion Channels AT2G25600 30.526 1.70e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07054 - - gmx:100527544 302.753