Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07046 ATGGCGGTTCCTGGGAGGCGCAATGGTTTCAACGAAGACGACGATGAAGAATCCAACGGTATTTTCGAAGAACAATCTCTCGCCGTTGAAGAAACCGATACTCCTCCTCATCTTCGTGACCTCTCCCATGCCGCTCAAACCGGCGACCTCAACGCCCTTCGCATCGCTCTCGATAATTTGAGTGGGAGTATTGATGAACCTCTAGAGGATGGGGATAGTGCTCTTCATTTGACTTGTTTGTACGGCCATTTTGCATGTGCCCAGCTTCTACTAGAAAGAGGAGCTGATTTGGAGGCTAAGGATGAAGATGGGGCAATTCCTTTACACGATGCATGTGCAGGAGGATTTTTGGAGATAGTCCAACTTCTACTTAACAGAGCTAATAACACTGCGCATATAAAAAGGATGTTAGAATCGGTCGATGCTGAGGGTGATACTCCTCTTCATCATGCTGCAAGAGGTGAGCATGCCGATGTAATTAGGTTGTTGCTGTCTAATGGTGCATCAGCCACAAAGGAAAACTTATATGGAAAGACCCCTGCAGAGTTACCTGACTACGGCACAAATGCTAGGACGCTGCTTGAAGCTGCTGCTACTGCCATGGCAACCTAA 612 0.4755 MAVPGRRNGFNEDDDEESNGIFEEQSLAVEETDTPPHLRDLSHAAQTGDLNALRIALDNLSGSIDEPLEDGDSALHLTCLYGHFACAQLLLERGADLEAKDEDGAIPLHDACAGGFLEIVQLLLNRANNTAHIKRMLESVDAEGDTPLHHAARGEHADVIRLLLSNGASATKENLYGKTPAELPDYGTNARTLLEAAATAMAT 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07046 203 SUPERFAMILY Ankyrin repeat 41 182 IPR036770 -
Vivi1g07046 203 ProSiteProfiles Ankyrin repeat profile. 103 135 IPR002110 GO:0005515
Vivi1g07046 203 SMART ANK_2a 70 99 IPR002110 GO:0005515
Vivi1g07046 203 SMART ANK_2a 143 172 IPR002110 GO:0005515
Vivi1g07046 203 SMART ANK_2a 103 132 IPR002110 GO:0005515
Vivi1g07046 203 Pfam Ankyrin repeats (3 copies) 103 172 IPR002110 GO:0005515
Vivi1g07046 203 Pfam Ankyrin repeats (3 copies) 41 101 IPR002110 GO:0005515
Vivi1g07046 203 ProSiteProfiles Ankyrin repeat region circular profile. 70 102 - -
Vivi1g07046 203 ProSiteProfiles Ankyrin repeat profile. 143 175 IPR002110 GO:0005515
Vivi1g07046 203 ProSiteProfiles Ankyrin repeat region circular profile. 103 129 - -
Vivi1g07046 203 ProSiteProfiles Ankyrin repeat profile. 70 102 IPR002110 GO:0005515
Vivi1g07046 203 FunFam BRCA1-associated RING domain protein 1 35 202 - -
Vivi1g07046 203 Gene3D - 35 202 IPR036770 -
Vivi1g07046 203 ProSiteProfiles Ankyrin repeat region circular profile. 143 174 - -
Vivi1g07046 203 PANTHER SOWAH (DROSOPHILA) HOMOLOG 142 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07046 Vivi-Chr1 169706087 169708413 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07046 24 189 Ion Channels AT2G25600 31.606 3.30e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07046 - - gmx:100527544 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07046 1 169706087 169708413 Vivi1g07046 1 169706087 169708413 ECH