Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07045 ATGCAAGTCCTAGAAGAACAACAACTCATGGTGGTTTCTAAGGATCTTACACAACAACATGTCATAAAAGGAAAGAGAACAAAGCGCCAAAGGTTGCCTTCTCCACTTAGGTTAGCCATGTCTTGCAATGAAGGAACCAGTTATTCCGATGATCGAAATTCAAAAGGAATTGATTTCGCGATAATAAAATCGCGTGACCGATCAGAAGAAGAAAAAGAAGAAGAAGATATGGCGAATTGTCTTATTCTATTAGCTCAAGGTCGTCATCGTCATGATCATCATCGTCAGGATCAACATCTGATCCATGTCGATGATGATAACAATAGCAACAACAAAAGACCTTCAAATTTTTATCTTTATCAATGCAAGACATGCAATAGATGCTTCCCTTCATTTCAAGCACTTGGTGGACATAGAGCGAGTCATAGCAAACCTAACAAACCAAATTGTAACAATAATGTTACAAGAACTTTTGTTGATAATCATTATGATCCAACCATGAATACTATACTCTCTTTGCAAGCCTTTACCGCCTCCGCGACCCCGATCACTACTATTACTACTACCACTACAAAAAAGTCGAAAGTTCACGAGTGTTCGATATGTGGCGCGGAATTCTCCTCGGGCCAAGCGTTGGGAGGACACATGCGACGACATAGAACACTCGTGAACACGTCGACAACAACTACAACGACGACAGCGGCAACAACTTCTTTGAGTATGAGTATTGGAAGCCCTAGATCTCATGAAGCTAAGAAACCAAGAAATGTCTTGAAGTTGGATTTGAATCTTCCAGCTCCGGAAGTTGAACAAAGAGATCAATCCAAGTTTTCTTTTCAGCCTAGGGAAAATGTTATTGCTTTCTCTAGTAATTCTTCTTTGGTGGATTGCCATTTCTAA 900 0.4011 MQVLEEQQLMVVSKDLTQQHVIKGKRTKRQRLPSPLRLAMSCNEGTSYSDDRNSKGIDFAIIKSRDRSEEEKEEEDMANCLILLAQGRHRHDHHRQDQHLIHVDDDNNSNNKRPSNFYLYQCKTCNRCFPSFQALGGHRASHSKPNKPNCNNNVTRTFVDNHYDPTMNTILSLQAFTASATPITTITTTTTKKSKVHECSICGAEFSSGQALGGHMRRHRTLVNTSTTTTTTTAATTSLSMSIGSPRSHEAKKPRNVLKLDLNLPAPEVEQRDQSKFSFQPRENVIAFSSNSSLVDCHF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07045 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Vivi1g07045 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 219 IPR013087 -
Vivi1g07045 299 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Vivi1g07045 299 PANTHER ZINC FINGER PROTEIN ZAT5 66 279 - -
Vivi1g07045 299 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Vivi1g07045 299 Pfam C2H2-type zinc finger 120 145 - -
Vivi1g07045 299 Pfam C2H2-type zinc finger 196 220 - -
Vivi1g07045 299 Gene3D Classic Zinc Finger 118 219 - -
Vivi1g07045 299 SMART c2h2final6 197 219 IPR013087 -
Vivi1g07045 299 SMART c2h2final6 120 142 IPR013087 -
Vivi1g07045 299 SUPERFAMILY beta-beta-alpha zinc fingers 119 219 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07045 Vivi-Chr1 169688605 169689792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07045 21 298 C2H2 Transcription Factor Family AT5G03510 40.728 4.96e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g07045 zf-C2H2_6 1.2e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07045 1 169688605 169689792 Vivi1g07045 1 169688605 169689792 ECH
Vivi1g07045 1 169688605 169689792 Vivi2g06455 2 200674630 200675732 ECH