Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07035 ATGACCCAAACAACCTGCATTTTCCTAATCTCACTCATAGCTTCCTTTTTCACCCATGGAACTTCCATGCTCAACCTCACTCTCCCTGCTCAACATCCTGACCCTGAATCTGTTGCCATAGAAGTTCACAGGAAAGTGAATGAATCAATGGGAAGAAGAGAAATGCTATCGCTATCAACCAAAGATTTTTCCTCATCCTGCCAAACAGGCAACCCGATAGACGATTGTTGGAAATGCGACCCAGATTGGTCCAACAATCGTCAAAGGTTAGCAGATTGTGGCATTGGGTTTGGCCAGAATGCCAAAGGAGGAAAAGGTGGTAAATTCTACATTGTAACAGACTCATCCGACAATGATCCTGTGAACCCAAAACCTGGTACACTAAGATATGCTGTCATACAGAATGAACCGTTGTGGATTGTTTTTCCAAGTAACATGATGATTGAGTTGTGTCAAGAGCTTATTTTTAACAGCTTTAAGACTATTGATGGACGTGGTGCTGATGTTCATATTGTGGGTGGTGGGTGCATTACTCTTCAGTATATTAGTAATGTTATTATACATAACATTCATGTTCATCATTGTCATCCTTCAGGTAACACTAACGTGAGATCAAGTCCAGAACACTACGGATACAGAACAATATCAGACGGAGACGGAATCTCCATATTCGGATCAAGCAACATATGGATAGACCATTGCACACTCTCCCGTTGCAAAGACGGTTTAATCGATGCCGTAATGGGTTCAACTGCAATAACTATCTCCAACAACCATTTCTCACACCACAATGAGGTTATGTTACTAGGTCACAGTGATCATTACAAACCAGACTCAGCAATGCAAGTAACTATAGCATTCAACCATTTTGGAGAACAGTTAGTTCAACGAATGCCACGTTGCAGACTCGGATACATCCACGTCGTAAATAACGATTTTACGAGGTGGGAGATGTATGCTATTGGCGGAAGTGGTGGGCCCACTATTTATAGTCAAGGTAACAGGTATACGGCTCCTGAGGATGTTGATGCGAAACAAGTGACGAAGAGGTTGGATTCGGGTGAAGGGGAATGGACGACATGGAATTGGAAATCGGAGGGTGATTTTATGGTGAACGGTGCATTTTTTGTCGATTCAGGTAGTGAGAGTGAAGGGAATTTTCAGAAGGCTTATAGTGTCGATCCTAAAACGGTTGATCGGATTTCTGCTCTTACTATGTCTGCCGGTGTTCTTGGTGTTGCTAGGGACAACAATCTGGGAATGTGGACAAGAGCACCGAACGGTGGTGGTGATTATAGTATTTCATATTCCGGAGAACAAGAGTACACTGATGACATGTCCCACAGTACGATGATGTTGACCCATTTCTTTACTTTGACTCTTGTATCTCTTTTTGTTGCACTTTTGTGTTTGTTGTCTTATGCACCCATTCTATCCTAA 1440 0.4243 MTQTTCIFLISLIASFFTHGTSMLNLTLPAQHPDPESVAIEVHRKVNESMGRREMLSLSTKDFSSSCQTGNPIDDCWKCDPDWSNNRQRLADCGIGFGQNAKGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIELCQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTISDGDGISIFGSSNIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTIYSQGNRYTAPEDVDAKQVTKRLDSGEGEWTTWNWKSEGDFMVNGAFFVDSGSESEGNFQKAYSVDPKTVDRISALTMSAGVLGVARDNNLGMWTRAPNGGGDYSISYSGEQEYTDDMSHSTMMLTHFFTLTLVSLFVALLCLLSYAPILS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07035 479 Pfam Pectate lyase 156 324 IPR002022 -
Vivi1g07035 479 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Vivi1g07035 479 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Vivi1g07035 479 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Vivi1g07035 479 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Vivi1g07035 479 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Vivi1g07035 479 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Vivi1g07035 479 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Vivi1g07035 479 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Vivi1g07035 479 PANTHER PECTATE LYASE 18-RELATED 27 414 IPR045032 GO:0030570
Vivi1g07035 479 Gene3D - 70 412 IPR012334 -
Vivi1g07035 479 FunFam Pectate lyase 70 412 - -
Vivi1g07035 479 SMART amb_all 145 342 IPR002022 -
Vivi1g07035 479 SUPERFAMILY Pectin lyase-like 63 406 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07035 Vivi-Chr1 169107150 169111057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07035 1 479 Polysaccharide Lyase AT3G53190 67.769 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07035 K01728 - gmx:100815062 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07035 1 169107150 169111057 Vivi1g07035 1 169107150 169111057 ECH
Vivi6g04126 6 140031397 140034933 Vivi1g07035 1 169107150 169111057 PCT