Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07032 ATGCATGGAGAAAATTTACATAAGGGAACTTGGCTTCAAGAGGAAGATGAACAATTGATTAGCTTTGTGACTCGTCTTGGGGAACGAAGGTGGGATTCCCTTGCCAAAGTAGCTGGGCTAAGGAGAAGTGGTAAAAGCTGTCGGTTAAGGTGGTTGAACTATCTTCGTCCAAATCTCAAGCATGGCCCGTTTAGTGTTGAAGAAGAGAAGCTTATTGTTCAACTTCAGCTTCAATGGGGCAACAAGTGGTCCAAGATCGCGCGCAGGCTTCCAGGAAGAACAGACAATGAAATCAAGAACTATTGGAGAACTCATTTGCAGAAAGGAGTACAAGTTCAACAAAAAGAGGGAAACTTGTCTCCTTCCTTTAATTCATCATCTTCTTCTTCCTCGTCTCTGACATCAACTTCTTCTTGCTCGTTGACTGGTGGGTCTATAACTTGTGACTGGACAATCTGA 459 0.4336 MHGENLHKGTWLQEEDEQLISFVTRLGERRWDSLAKVAGLRRSGKSCRLRWLNYLRPNLKHGPFSVEEEKLIVQLQLQWGNKWSKIARRLPGRTDNEIKNYWRTHLQKGVQVQQKEGNLSPSFNSSSSSSSSLTSTSSCSLTGGSITCDWTI 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07032 152 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vivi1g07032 152 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vivi1g07032 152 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Vivi1g07032 152 FunFam Myb transcription factor 8 60 - -
Vivi1g07032 152 CDD SANT 63 106 IPR001005 -
Vivi1g07032 152 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 114 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vivi1g07032 152 SMART sant 60 108 IPR001005 -
Vivi1g07032 152 SMART sant 7 57 IPR001005 -
Vivi1g07032 152 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vivi1g07032 152 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Vivi1g07032 152 CDD SANT 10 55 IPR001005 -
Vivi1g07032 152 MobiDBLite consensus disorder prediction 117 141 - -
Vivi1g07032 152 Gene3D - 62 135 - -
Vivi1g07032 152 Gene3D - 8 60 - -
Vivi1g07032 152 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Vivi1g07032 152 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07032 Vivi-Chr1 169031509 169037503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07032 4 122 MYB Transcription Factor Family AT5G59780 57.983 3.21e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g07032 Myb_DNA-binding 4.1e-14 CL0123