Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07028 ATGGCTGTGAATCTGACGCATGGAGCCATAGCTAGAATTTGCAGCAACGAATCTGTCTACTCTCCTGATAGAGAGTTTAAACCGATTCTACAAGTAATTAAGGTGAAAAATCGATGTGTATGGCTTTCTGATGGCACAAATTCTAATCTCGGAATGCTCGTCAGTAAATTATTCAATTTGGTATTTTCAACATTGTTGCATGAAGGTTCAGTTGTTAAACTCACTAATTACACGTTGAGCAAATCTTTACACAGGATTATTTTCATCTTAGACCTTGATGTTGCACCAGACAAATATCATCTTATAGGACAACCTCTCCCACTACCCAAAAATGCATCAAGTTTACAACCTAACGTCTCCGACCTGCAGTTCTCTAACCTTCGCTTGTCTGATGAGAGAAAATATCTGACGCAAAATGCCATAGAAATAATATGCAGCGGCGTCGTCAGCGACAGTCTCTCTTGTGATAATGACTTTAAGCCGGTGCTGCAAGTCCTCGACGCGAAAAAGAACTATATCTGTCTTTCTGATGGTAACCATGCTATTTATGCAGTGCCACCCAGTAACTTAGCAGAAGAATTGCGGTATTATAATGTTGAAATTCTCTCCAGTGGTTTGGAACAAGAGTTAGTCCTTTCACCAAGGCTCAACAGTTTCTCCATTGTTAAACTTACTAACTACATGTTGAAAAATTTTGATGGCCACAAGTTTATCATCATCTTTGATTATGATGTTGTACCAGACACATGTGATCTGATCGGAAGTCCTGTCCTACTACCCGAGACTAATGTTCCTATGTCAATAAACGCGATTCAAAAATTTAGTAGTACATGGACACCGGTGAATCTGACGCAAGGGGCGATAGAGATAATGTTTAGTGACGAATACTCTTGCGATAAAGGGTTTAGGCCGGTGTTGCAAATTCTCTTCATGAGTATCAACAGTCTTTTGCTGTCTGATGGATTATATGCTAATACAGTAAACTTGCCGAAGAATTTGACAGAGTTGGTTAGAACCAGAAGGTTGCAGACATGGTCGGTTATTAAAGTTACTCATTTCTATGTGAGTGTGATTCAAAACCGCAGGACTATTACCATTGTGGATCTCGATGTTATACTCGACGATTGCGGGTTGATCGGACGACCTGTCAAACCGCCGAATAATGTACCTGAGATAAATGTTATACGGGCTGGATATAGGTGA 1203 0.4015 MAVNLTHGAIARICSNESVYSPDREFKPILQVIKVKNRCVWLSDGTNSNLGMLVSKLFNLVFSTLLHEGSVVKLTNYTLSKSLHRIIFILDLDVAPDKYHLIGQPLPLPKNASSLQPNVSDLQFSNLRLSDERKYLTQNAIEIICSGVVSDSLSCDNDFKPVLQVLDAKKNYICLSDGNHAIYAVPPSNLAEELRYYNVEILSSGLEQELVLSPRLNSFSIVKLTNYMLKNFDGHKFIIIFDYDVVPDTCDLIGSPVLLPETNVPMSINAIQKFSSTWTPVNLTQGAIEIMFSDEYSCDKGFRPVLQILFMSINSLLLSDGLYANTVNLPKNLTELVRTRRLQTWSVIKVTHFYVSVIQNRRTITIVDLDVILDDCGLIGRPVKPPNNVPEINVIRAGYR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07028 400 SUPERFAMILY Nucleic acid-binding proteins 281 378 IPR012340 -
Vivi1g07028 400 SUPERFAMILY Nucleic acid-binding proteins 1 100 IPR012340 -
Vivi1g07028 400 Gene3D - 3 108 IPR012340 -
Vivi1g07028 400 Gene3D - 281 385 IPR012340 -
Vivi1g07028 400 Gene3D - 135 259 IPR012340 -
Vivi1g07028 400 Pfam Replication factor-A protein 1, N-terminal domain 5 94 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vivi1g07028 400 Pfam Replication factor-A protein 1, N-terminal domain 283 372 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vivi1g07028 400 SUPERFAMILY Nucleic acid-binding proteins 136 254 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07028 Vivi-Chr1 168801141 168802753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07028 281 398 Core DNA Replication Machinery Family AT5G45400 31.818 2.82e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07028 K07466 - vvo:131659223 788.875