Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07010 ATGGCCAAAAACTGCTTCGACCTCAAAACGATGACGTATTCATCACCAAGACAACCCATCCACCTTCCCACCGATCCCAATCTCTCCCTAACCTCCTTCCTCTTCCAATCCACTTCCTCCGCCGCTGACACCGTCGCTCTTGTCGATGCACAAACCGGTGACTCCCTAACCTTCCGCCAACTTAAAACACAAGTCACCGCCCTCTCCCGCTCCTTACTCCGCCTTGGCATCCAACGCGGCGACGTCGTTTTGCTATTCGCACCTAACTCTATACGCTTCCCTGTCTGCTTCTTAGCTATAGTTTCCATAGGTGCTATTGCCACCACCTGTAGTCCTTTATACACCGTCACCGAACTCACCAAACAAATAGAAGACTCCAATCCCAAACTCGCCTTCACCGTATTGGAACTTCTAGATAAAATCGAACAGTTACCCTTGGATTTACCTTCAATATTGCTTGACGATGCTTCATACCTATTATTTCCTCCAAAAATATTCAGTTCATTGGTTTGGGACTACCAGGATTTTACCGGAGAGTCAAACGAGAGTTCCGAAGAGTTGTTTCCGGCAAACTGTTTCGTTTCACAATCCGACGTGGCGGTGATTCTGTACTCTTCAGGAACCACTGGGAGAAGTAAAGGAGTAATGCTGACTCACAAGAACTTCATAGCGACGGCCGTGGCAGGAACAGCGGATCAGGATTTCTACGGTGAAGGGAAGAATGTGTTCTTATGTTTGGTGCCAATGCATCATGTGATGGGATTGGCAGTGATAACGTACACGCAGCTGCGGAGAGGGAATACGGTGGTGATTATGGGTAAATTTGAACTGGAGAAGACTTTGGCGGCTGTGGAGAAGTTTAAGGTGACACATTTGTATGTTGCTCCACCGGTGATGGTGGAGCTGGTCAACCGGCGTCAGGTTGTGGACGGTTACGACTTGTCGTCGCTGAAACAGCTTGCAGGTGGTGCTGCTCCTTTAGGAAAAGATCTGATGCAAGAGTGTGCTAAGATTCTACCAAAAATTGAAATCATTCAGGGGTATGGCATGACTGAAGGATGTGGACTTGTTTCATGTGAAAATCCAAAGGAAGAGTGGTTCATTTCTGGTTTAGGTTCAACTGGGACACTGCTTCCTAGTTTTGAATCCCAAATAGTTAGTTTGGCAACATCTAAACCCCTTCCACCAAATCAAGTAGGAGAGATTTGGTTAAAAGGACCTTCTATGATGAAAGGATATTTTAACAATCCAGAAGCTACGAAACTGACGATTAATGATGAGGGTTGGATGATTACCGGAGATCTTGGATATTTTAACGAAAAGGGAGAACTATTTGTTGTGGATCGTATAAAAGAGCTCATCAAATGTTACGGGTTTCAAGTGGCTCCAGCTGAACTTGAAGACTTATTAATTTCTCATCCTGAAATTTCTGATGCTGGGGTGATCCCATCCCCTGATGCCAAAGCTGGTGAGGTTCCGGTGGCTTTTGTTGTTCGCGCTCCCAATAGCTCGATAACCCAAGAGGACATTCTGAAGTTTGTAGCAAAACAGGTAGCACCATACAAAAGGTTGCGACGAGTGACTTTCATAGACAAGATTCCAAAGTCACCCACTGGAAAGATCTTAAGAAAGGATCTTGTCATTTTGGATCAACAGATGAGATCAAAGTTATAG 1674 0.454 MAKNCFDLKTMTYSSPRQPIHLPTDPNLSLTSFLFQSTSSAADTVALVDAQTGDSLTFRQLKTQVTALSRSLLRLGIQRGDVVLLFAPNSIRFPVCFLAIVSIGAIATTCSPLYTVTELTKQIEDSNPKLAFTVLELLDKIEQLPLDLPSILLDDASYLLFPPKIFSSLVWDYQDFTGESNESSEELFPANCFVSQSDVAVILYSSGTTGRSKGVMLTHKNFIATAVAGTADQDFYGEGKNVFLCLVPMHHVMGLAVITYTQLRRGNTVVIMGKFELEKTLAAVEKFKVTHLYVAPPVMVELVNRRQVVDGYDLSSLKQLAGGAAPLGKDLMQECAKILPKIEIIQGYGMTEGCGLVSCENPKEEWFISGLGSTGTLLPSFESQIVSLATSKPLPPNQVGEIWLKGPSMMKGYFNNPEATKLTINDEGWMITGDLGYFNEKGELFVVDRIKELIKCYGFQVAPAELEDLLISHPEISDAGVIPSPDAKAGEVPVAFVVRAPNSSITQEDILKFVAKQVAPYKRLRRVTFIDKIPKSPTGKILRKDLVILDQQMRSKL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07010 557 Gene3D - 452 554 IPR045851 -
Vivi1g07010 557 FunFam 4-coumarate--CoA ligase 2 452 552 - -
Vivi1g07010 557 Pfam AMP-binding enzyme 40 456 IPR000873 -
Vivi1g07010 557 CDD 4CL 22 546 - -
Vivi1g07010 557 Pfam AMP-binding enzyme C-terminal domain 465 540 IPR025110 -
Vivi1g07010 557 Gene3D - 12 451 IPR042099 -
Vivi1g07010 557 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 547 - -
Vivi1g07010 557 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 451 - -
Vivi1g07010 557 SUPERFAMILY Acetyl-CoA synthetase-like 23 548 - -
Vivi1g07010 557 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07010 Vivi-Chr1 168073456 168076246 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07010 13 557 Monolignol Biosynthesis Gene Families AT4G05160 57.982 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07010 K01904 - psat:127097095 909.057