Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07008 ATGGCGAAAAACTGCTTCGACCCCAAAACGATGACGTATTACTCACCAAGACAACCAATCCACCTTCCCACCGATCCTAATCTCTCCCTAACCACCTTCCTCTTCCAATCCACTTCCTCCGTCATCGACACCATCGCCCTCGCCGACGCCCAAACTGGTGACTCCCTTACCTTCCGCCAACTTGAAACACAAGTCACCGCCCTCTCCCGCTCCTTACTCCGCCTCGGCGTCCAACAAGGCGACGTCGTTTTTCTATTCGCAGCTAACTCCATACGCTTCCCTGTCTGCTTCTTAGCTATAGTTTCCATAGGTGCTATTGCCACCACCTGTAGTCCTTTATACACCGTCTCCGAACTCACCAAGCAAATCCAAGATTCCAAACCGAAAATCGTCGTTACCGTATCAGAGCTTCTACACAAAATCGAACAAGTACCCTTAGATTTACCTTCAATATTGCTTGACGATTCTTCAACCAGAGTATTATCCTCGAAAATATTCAGTTCTTTGGTTTGGGACTTCAAGGATCTTATCAGAGAGTTAAACAACAGCCCCGACGAGATGCATGCAAACAGTGTTGTTTCGCAGTCCGACGTGGCGGTGATCCTATACTCTTCGGGAACCACCGGGAGAAGTAAGGGAGTGATGCTGACTCACCGAAACTTCATAGCGGCCGCGTTGGCGGGAGTAGCGGATCAGGAACACTACGGGGAAGGGAAGAATGTGTTCTTATGTTTGGCGCCAATGCATCATGTATTGGGATTGGGAATGATAACGTACACGCAGCTGCGGAGAGGGGATATGGTTGTATCGATGGCTAGATTTGAACTGGAGAAGACTTTGGCAGCTATCCAAAAGTTTAGGGTGACGCATTTGTACGTTGCTCCACCGGTGATGATGGAGCTGATCAAGCATCGTGACGTTGTGAGCAGTTATGACTTGTCTTCGCTGAAACAACTCGCCGGAGGGGCTGCTCCTTTGGGGAAAGATGTGATGCAAGAGTGTTCTAAGATTCTACCCCAAGTTGAAATCATTCAGGGTTATGGCATGACGGAAGCATGTGGACTTATTTCCTATGAAAATCCACACCAGGAATGGTTTGTTTCTGGTTTAGGATCAACTGGAACGCTAGTTCCAAATGTAGAATCTCGAATTGTTAGTTTGGAAACATTTAAGCCTCTTCCACCCAATCAATTAGGGGAAATTTGGTTTAGAGGACCTATTATGATGAAAGGATACTTTAACAATCCAGAAGCAACAAAACAGACCATTAATGATGAGGGTTGGTTGATTACCGGAGATCTTGGATATTTTGATGAAAAAGGGCAGCTATTTGTTGTGGATCGAATAAAAGAGCTTATCAAATGTAGCGGATATCAAGTGGCGCCTGCTGAGCTTGAAGATTTACTGGTTTCTCACCCTGAAATTTCTGATGCTGGAGTGATCCCATCCCCTGATGCCAAAGCTGGTGAGGTTCCGGTGGCTTTTGTTATTCGCTCACCCAATAGCTCGATAACCCAAGAGGACATTCTGAAGTTTGTGGCAAAACAGGTTGCACCATACAAAAGGTTGCGGCGAGTGACTTTTATAGAGAGAATTCCAAAGTCACCCACTGGAAAGATCTTAAGAAAGGATCTTGTAATTTTGGATAGACAAAAGATATCAAAGTTATAG 1671 0.4578 MAKNCFDPKTMTYYSPRQPIHLPTDPNLSLTTFLFQSTSSVIDTIALADAQTGDSLTFRQLETQVTALSRSLLRLGVQQGDVVFLFAANSIRFPVCFLAIVSIGAIATTCSPLYTVSELTKQIQDSKPKIVVTVSELLHKIEQVPLDLPSILLDDSSTRVLSSKIFSSLVWDFKDLIRELNNSPDEMHANSVVSQSDVAVILYSSGTTGRSKGVMLTHRNFIAAALAGVADQEHYGEGKNVFLCLAPMHHVLGLGMITYTQLRRGDMVVSMARFELEKTLAAIQKFRVTHLYVAPPVMMELIKHRDVVSSYDLSSLKQLAGGAAPLGKDVMQECSKILPQVEIIQGYGMTEACGLISYENPHQEWFVSGLGSTGTLVPNVESRIVSLETFKPLPPNQLGEIWFRGPIMMKGYFNNPEATKQTINDEGWLITGDLGYFDEKGQLFVVDRIKELIKCSGYQVAPAELEDLLVSHPEISDAGVIPSPDAKAGEVPVAFVIRSPNSSITQEDILKFVAKQVAPYKRLRRVTFIERIPKSPTGKILRKDLVILDRQKISKL 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07008 556 Pfam AMP-binding enzyme 43 455 IPR000873 -
Vivi1g07008 556 Gene3D - 13 450 IPR042099 -
Vivi1g07008 556 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 546 - -
Vivi1g07008 556 Pfam AMP-binding enzyme C-terminal domain 464 539 IPR025110 -
Vivi1g07008 556 SUPERFAMILY Acetyl-CoA synthetase-like 26 546 - -
Vivi1g07008 556 CDD 4CL 22 545 - -
Vivi1g07008 556 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 450 - -
Vivi1g07008 556 FunFam 4-coumarate--CoA ligase 2 451 551 - -
Vivi1g07008 556 Gene3D - 451 553 IPR045851 -
Vivi1g07008 556 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07008 Vivi-Chr1 168045936 168048550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07008 13 553 Monolignol Biosynthesis Gene Families AT4G05160 57.248 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07008 K01904 - psat:127097095 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07008 1 168045936 168048550 Vivi1g07008 1 168045936 168048550 ECH