Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07003 ATGTCACAAGGTTCTGAGCAATGGAAATGGTCTGAAATGCAAGGCATTGAGATGCTTTCATCTTCTGATACAACAGCTTCAATATCAACATTGGAGTTAGATAGACGAGAATCCAAGGAACATATGGAAGGGGAGAGTTCTTTACCCAACAATGAAAGCTGTGATTTTTCTAATGGAAATGAGAAGATTAAGGATGTTCCATCTGTTGGGTTTGGTGAGCTTTTCAGATTTGCTGATGGGTTGGATTATATTCTCATGACAGTTGGAACTCTTGGAGCTATTGTACATGGTTGTTCATTGCCACTTTTTCTTCGGTTCTTTGCTGATCTTGTCAACTCTTTTGGTTCTAATGCTAATGATTTGGACAAGATGACCCAAGAAGTTGTTAAGTATGCATTTTACTTTCTGGTTGTTGGTGCTGCTATTTGGGCATCTTCATGGGCAGAGATTTCTTGTTGGATGTGGACTGGTGAGAGACAATCAACAAGGATGAGAATTAAGTATCTTGAAGCTGCTTTGGATCAAGATATTCAGTTCTTTGACACTGAAGTTCGAACTTCCGATGTTGTTTTTGCCATCAACACTGATGCTGTTATGGTACAAGATGCTATAAGTGAGAAGTTAGGTAATTTTGTTCACTACATGGCTACATTTGTTTCTGGATTTGCGGTTGGTTTTAGTGCTGTTTGGCAATTAGCATTGGTTACACTTGCTGTTGTCCCTATGATAGCTGTAATAGGAGGCATTCATACTACCACTTTGGCTAAGTTATCTGGTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACTGTTGTTCAAATTAGAGTGGTGTTAGCATATGTTGGAGAGACAAAAGCACTACAAGGCTATTCATCTACTCTAAGCGTTGCTCAAAAGATCGGATACCGGACTGGACTTGCAAAGGGAATTGGATTAGGTGCTACTTACTTTGTTGTTTTCTGCTGCTATGCACTTTTGTTATGGTATGGAGGCTATTTGGTTAGGCATCACTACACTAATGGAGGACTTGCAATTGCTACCATGTTTGCTGTCATGATCGGTGGATTGGCTTTAGGCCAGTCTGCACCAAGCATGGCTGCATTTACGAAGGCCAGAGTTGCTGCTGCGAAAATTTTCCGTGTGATTGATCACAAGCCTTGTATAGACAAAAATAGCGAATCAGGTTTGGAGTTAGAGACTGTGACAGGACTAGTGGAGCTTAAAAATGTCGACTTTTTATATCCATCAAGACCTGAAGTTCAAATCCTTCACAATTTCTCCTTGAATGTTCCTTCTGGCAAGACCATAGCATTGGTTGGAAGTAGCGGCTCTGGAAAAAGCACGGTTGTGTCCCTCATTGAGAGATTCTATGACCCTTCTTCTGGAGAAGTTCTGATAGATGGACATGATGTTAAGACATTGAAGCTTAAATGGTTGAGACAACAGATAGGACTTGTGAGCCAAGAACCGGCTTTATTCGCCACCACGATTAAAGAAAATATACTGTTGGGTAGACCTGATGCTGATCAGGTTGAGATCGAAGAAGCTGCTAGAGTAGCTAATGCTCATTCATTCATCTTCAAACTTCCTCAAGGTTATGAAACTCAGGTAGGGGAGAGAGGGTTGCAACTATCAGGGGGACAAAAGCAGAGAATAGCGATTGCAAGGGCAATGCTTAAAAACCCAGCAATTCTTCTCCTAGATGAGGCAACGAGTGCATTGGACTCCGAGTCAGAAAAGCTGGTTCAAGAAGCTCTTGATAGGTTCATGATTGGTAGAACAACTCTTGTAATTGCGCATCGACTATCTACTATTCGCAAAGCTGACCTTGTCGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATCGGGACTCATGACGAGCTCTTTGCTAAAGGGGAAAATGGAGTTTATGCCAAGCTTATCAGAATGCAGGAGACGGCAAATGAAAGTTCAACGAGCAATGCCAGAAAAAGTAGTGCAAGGCCTTCTAGTGCTAGGAATTCTGTAAGCTCACCGATAATTACTCGGAATTCTTCTTATGGTGGCCGATCACCATACTCGAGGAGGTTTTCTGATTTCTCCACATCTGATTTTAATCTCTCCCATGATGCATCGTATCCAAATTACAAGCTTGAGAAGCTTGCGTTCAAAGAGCAAGCGAGTTCCTTCTGGCGGCTTGCAAAAATGAACTCTCCCGAATGGTTATATGCATTGATTGGTTCTATAGGCTCTATTGTTTGTGGATCCCTTAGTGCATTCTTTGCTTATGTTCTCAGTGCTGTCCTCAGTGTTTATTACAATCCAAACCATAAGCACATGATTAGAGAAATCGAGAAATACTGTTACTTGCTGATTGGACTTTCGTCGGCAGCACTTTTATTCAATACATTGCAGCACTTCTTCTGGGATGTTGTCGGTGAAAATCTTACTAAACGAGTGAGGGAGAAAATGTTGAGTGCGGTGCTTAAAAATGAAATGGCATGGTTTGATCGAGAGGAAAATGAGAGTGCTAGGATTGCAGTAAGATTAGCTCTTGATGCCAACAATGTTAGATCTGCTATTGGAGATCGGATTTCGGTAATTGTGCAGAACACTGCACTTATGCTTGTTGCTTGTACAGCAGGGTTCGTATTGCAGTGGCGACTTGCCCTTGTTCTCGTTGCCGTCTTCCCGGTTGTTGTCGCAGCCACTGTCTTACAGAAAATGTTCATGTCGGGTTTCTCTGGCGACTTGGAAGCTTCACATGCCAAGGCCACACAACTAGCTGGGGAGGCTATAGCCAATGTAAGGACCGTTGCTGCGTTTAATTCGGAAAAGAAAATTGTTGGCCTTTTCGCTTCAAACCTTGAAACTCCACTACGGCGTTGCTTTTGGAAGGGACAGATTTCTGGAATTGGTTATGGGATAGCTCAGTTTGCACTCTATGCTTCCTATGCTCTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCACGGTATCTCCGATTTCTCTAAAACAATCAGAGTATTTATGGTCCTCATGGTCTCTGCTAATGGTGCTGCCGAAACATTAACTCTGGCTCCTGACTTCATCAAGGGAGGCCGAGCTATGAGGTCGGTTTTCGATCTCCTTGACCGTAGAACTGAAATTGAGCCAGATGATCCAGATGCTGTCCATGTCCCCGACTCTCTTCGCGGTGAAGTGGAACTCAAGCATGTTGACTTCTCTTATCCCAGCCGACCAGATATGCCGGTTTTCCGCGACCTTAGTCTTCGTGCAAAGGCAGGCAAAACTCTTGCCCTTGTAGGCCCTAGTGGATGTGGTAAGAGCTCGGTTATTGCACTTATACAAAGATTCTACGATCCAATGTCCGGCCGAGTCACGATTGATGGAAAGGACATACGAAAATACAATCTCAAGTCCCTTAGAAAACACATCGCAGTGGTACCCCAAGAGCCATGCTTATTTGCTACTACTATCTACGAAAACATTGCTTATGGACACGACTCAGCTTCGGAAGCCGAGATTATCGAAGCCGCGACTCTCGCCAATGCTCACAAGTTCATATCTTCTCTCCCCGACGGATACAAAACATTTGTCGGCGAACGAGGAGTTCAACTATCCGGCGGACAGAAGCAAAGAATAGCAATTGCTCGAGCTTTTATACGGAAAGCAGAACTCATGCTTCTCGATGAAGCAACAAGTGCACTTGACGCTGAATCCGAACGGTCTGTTCAAGAGGCCCTCGACCGCGCCTGCTCAGGAAAAACTACTATCATTGTCGCACACAGGCTATCAACTATTAGGAATGCCAATCTCATTGCAGTGATTGATGATGGGAAAGTCGAGGAACAAGGCTCACATTCTCATTTGTTGAAAAATCACCCGGATGGGATCTACGCACGCATGATTCAACTGCAAAGGTTGACGAATAACCAAGTCGTTGGAACCGTGTCGAGTTCAGGTTCTTCAGCAAGAACAAAACATGATGAAGCTGAATGCTAG 3999 0.4361 MSQGSEQWKWSEMQGIEMLSSSDTTASISTLELDRRESKEHMEGESSLPNNESCDFSNGNEKIKDVPSVGFGELFRFADGLDYILMTVGTLGAIVHGCSLPLFLRFFADLVNSFGSNANDLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIKYLEAALDQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFVHYMATFVSGFAVGFSAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALSQAGNIVEQTVVQIRVVLAYVGETKALQGYSSTLSVAQKIGYRTGLAKGIGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLALGQSAPSMAAFTKARVAAAKIFRVIDHKPCIDKNSESGLELETVTGLVELKNVDFLYPSRPEVQILHNFSLNVPSGKTIALVGSSGSGKSTVVSLIERFYDPSSGEVLIDGHDVKTLKLKWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEIEEAARVANAHSFIFKLPQGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQETANESSTSNARKSSARPSSARNSVSSPIITRNSSYGGRSPYSRRFSDFSTSDFNLSHDASYPNYKLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSVYYNPNHKHMIREIEKYCYLLIGLSSAALLFNTLQHFFWDVVGENLTKRVREKMLSAVLKNEMAWFDREENESARIAVRLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMSGFSGDLEASHAKATQLAGEAIANVRTVAAFNSEKKIVGLFASNLETPLRRCFWKGQISGIGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDPDAVHVPDSLRGEVELKHVDFSYPSRPDMPVFRDLSLRAKAGKTLALVGPSGCGKSSVIALIQRFYDPMSGRVTIDGKDIRKYNLKSLRKHIAVVPQEPCLFATTIYENIAYGHDSASEAEIIEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARAFIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIIVAHRLSTIRNANLIAVIDDGKVEEQGSHSHLLKNHPDGIYARMIQLQRLTNNQVVGTVSSSGSSARTKHDEAEC 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07003 1332 FunFam ABC transporter B family member 1 722 1031 - -
Vivi1g07003 1332 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 743 1030 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g07003 1332 Pfam ABC transporter transmembrane region 87 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g07003 1332 Pfam ABC transporter transmembrane region 744 1013 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g07003 1332 Gene3D ABC transporter type 1, transmembrane domain 73 665 IPR036640 GO:0005524|GO:0016020
Vivi1g07003 1332 FunFam ABC transporter B family member 19 1032 1054 - -
Vivi1g07003 1332 Gene3D - 400 650 IPR027417 -
Vivi1g07003 1332 Gene3D - 1064 1311 IPR027417 -
Vivi1g07003 1332 FunFam ABC transporter B family member 1 1056 1306 - -
Vivi1g07003 1332 ProSitePatterns ABC transporters family signature. 1205 1219 IPR017871 GO:0005524|GO:0016887
Vivi1g07003 1332 CDD ABC_6TM_Pgp_ABCB1_D1_like 86 383 - -
Vivi1g07003 1332 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 88 375 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g07003 1332 FunFam ABC transporter B family member 1 73 408 - -
Vivi1g07003 1332 CDD ABC_MTABC3_MDL1_MDL2 1066 1305 - -
Vivi1g07003 1332 MobiDBLite consensus disorder prediction 33 59 - -
Vivi1g07003 1332 SUPERFAMILY ABC transporter transmembrane region 730 1050 IPR036640 GO:0005524|GO:0016020
Vivi1g07003 1332 Gene3D ABC transporter type 1, transmembrane domain 701 913 IPR036640 GO:0005524|GO:0016020
Vivi1g07003 1332 Gene3D ABC transporter type 1, transmembrane domain 965 1063 IPR036640 GO:0005524|GO:0016020
Vivi1g07003 1332 SUPERFAMILY ABC transporter transmembrane region 74 394 IPR036640 GO:0005524|GO:0016020
Vivi1g07003 1332 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 410 646 IPR003439 GO:0005524
Vivi1g07003 1332 PANTHER ABC TRANSPORTER B FAMILY 57 794 IPR039421 -
Vivi1g07003 1332 Pfam ABC transporter 1085 1233 IPR003439 GO:0005524
Vivi1g07003 1332 FunFam ABC transporter B family member 1 400 650 - -
Vivi1g07003 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1057 1305 IPR027417 -
Vivi1g07003 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 649 IPR027417 -
Vivi1g07003 1332 SMART AAA_5 437 623 IPR003593 GO:0016887
Vivi1g07003 1332 SMART AAA_5 1093 1285 IPR003593 GO:0016887
Vivi1g07003 1332 MobiDBLite consensus disorder prediction 652 687 - -
Vivi1g07003 1332 CDD ABC_MTABC3_MDL1_MDL2 410 649 - -
Vivi1g07003 1332 Pfam ABC transporter 428 577 IPR003439 GO:0005524
Vivi1g07003 1332 ProSitePatterns ABC transporters family signature. 549 563 IPR017871 GO:0005524|GO:0016887
Vivi1g07003 1332 CDD ABC_6TM_Pgp_ABCB1_D2_like 732 1048 - -
Vivi1g07003 1332 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1066 1302 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07003 Vivi-Chr1 167868338 167874293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07003 62 1330 Calmodulin-binding Proteins AT2G36910 86.535 0.0 2258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07003 K05658 - gmx:100777382 2233.76