Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06966 ATGAGGAATCATGTTTTCTACATTGCTCTCTTTTTCCTATTCTCTTTCACTCTTTTACCGAGAATTCACTGCGCCGAAGGCACTTTTGCTCCTTCCTTTTACACCGATGAAATCTACAAGGAACTTCAGAATATCGCTTTACTTTTGAATAAGGATATTAAATCGAGTTTAGATTTCTGCATTAAGGATCCGAAAAAAGATTGGGAAGAAGCTTTTGATTTCACGGGGAGGTTGGATTTTGTTGATTCTTGTGTTAAGAAAAAAGGAGATTTCAGGGACCGTATATGTACTGCGGCTGAGATAAGGTACTACTTCCATGGTTTCTTGGCACAGGGAGCAGCTACAGACAATTATGTAAAACCAAACAAGAATTGCAATTTGACCTCATGGGTTTCTGGTTGTGAACCTGGATGGGGTTGTAGTACGGGCGTTAATATTGACCTAAAAAAGGACACAAAGGAAATTCCAAAGAGAACCAAAAACTGTAAACCTTGCTGCGAGGGTTTTTTCTGTCCTCAAGGATTGACTTGTATGATACCTTGCCCGCTAGGTTCTTATTGCCCGCTTGCAAAACTGAACAACCAGACTGGACTATGTGACCCATATAGTTACCAGATACCTCAGGGAGAGCCGGGACATACTTGTGGCAGTGCTGATATTTGGACTGGCGTGGTGAACAATAGTGATATATTCTGTTCTCCTGGATCATACTGCCCAACTACAACACGTAAAGTTTCTTGTGATCGTGGATATTACTGCAGGATGGGTTCTACTCATCAGAATCCATGCTCCAAGTTCAGCCAATGTAATCCAAACACAACGAACCAAAATATGCATGCTTATGGCGCTCTGCTTATTGTTGCATTGAGTACTGTCTTGATCTTCATTTATAATTGTTCTGATCAAGTTCTAGCTACTCGAGAAAGAAGGAAAGCTAAATCCAGAGAAGCTGCAGCAAGGCAGGTAAGAGAAACTGTACAAGCTCGAGAAAGATGGAAGATAGCGAAAGATGCTGCTAAAAGGAATAAGACAGGATTGCAAGATCAGCTAGTACGCACTTTTTCTCGCAGAAAATCATCAAAGCAAGCAGAGCAAGTTAATCCTGCTACAGGCAATTCAGTTTTGCCACCTATGCCTCCAGAACAACCATCTGCAGCCACAAAAGACCCAACAAAGGAACCTAGTGACCTTACTAAAATGTTGAATTCCCTTGAGAATGACCCTAATAGCAATGAAGGATTCAATCTAAAGATTGGGGACAAAAATATTAAAAAACAATTGCCTAAGGGAAAAAATTTACATACACAAAGTCAAATTTTAAGATATGCTTATGGTCAGATTGAGAAGGAGAAAGCTCAACAAGACAAAAATAACTTGACCTTCTCAGGAGTGATTTCAATGGCCGCCGATGGTGAGGAGGTTAGATCGAGGCCTGAGATCGAGGTAGCTTTCAAAGATTTAACCCTTACTTTGAAAGGGAAAAAAAAACATGTAATGAGATGCGTGACAGGTAAAATCATGCCTGGTCGTGTTTCGGCTGTGATGGGTCCTTCGGGAGCTGGAAAAACTACATTTCTTTCTGCTCTAGCAGGGAAAATAAGAGGATGCACTATGACAGGCTCAATTCTAATCAATGGAAAACCTGAATCTATTCACTGTTACCAGAAAATTATTGGATATGTGCCACAAGATGATATTGTGCATGGGAACTTGACAGTGGAGGAAAATCTTCGGTTCAGTGCAAGATGCAGACTATCTGATGACCTGCCAAAACCAGATAAGGTTCTGATTGTTGAAAGAGTAATTGAAACCTTGGGACTTCAGGCAATAAGAGATTCCCTTGTTGGAACAGTAGAGAAGCGAGGCATATCTGGTGGGCAACGAAAACGTGTAAATGTAGGGTTGGAGATGGTTATGGAGCCTTCATTGTTAATCTTAGATGAGCCTACAACTGGTTTGGACAGTGCATCTTCCTCTTTACTGCTGAAAGCACTTCGTCGTGAAGCTGCTGAAGGGGTAAACGTCTGCATGGTACTTCACCAACCTAGCTATACTTTGTTCAGAACGTTTGATGATATAATATTTCTAGCAAAAGGTGGTCTTACTGCATATCACGGTCCTGTGAAAAAAGTAGAAGAATATTTTGCTGGCATTGGAATCGTTGTTCCTGATCGTGTGAATCCTCCAGACCATTATATTGACATTTTGGAAGGTTTAGTGAAACCAAATGAAGGTGTGACTCATCAACAACTACCTGTGAGATGGATGCTTCACAATGGTTACCCAGTACCACCAGATATGCTTCATTTTGCTGATGAAATTTCAGCTTCATCATCTTCCACAAATATAAATCATGCAGCTAAGAGTACTGATGAGGCTACTGATCAATCATTTGCTGGAGAGTTTTGGGAGGATATGAAAAGTAACGTGCAGTTGCAAAAAGATCATATAGAGGCAACCTTCTTAAGGACTAAGGATTTATCAAACCGAAGAACGCCTGGTATAAGTCGCCAGTATAGATACTACCTTGGGCGGATTGGTAAGCAGCAGCTCCGAGAAGCAAAGTCCCAAGCAGTTGATTATCTCCTTTTATTAGTTGCTGGTGCTATCTTGGGAACTCTTACCAAAGTAAATGATGAAACATTTGGGTCTCTTGGATATACATATACCGTCATTGCTGTTTCTCTACTTTGCAAGATTGCAGCTCTAAGATCATTTTCTTTGGATAAATTACAATACTGGAGGGAGAGTGCATCTGGGATCAGCAGTCTAGCTCATTTTTTATCCAAAGATACAATTGATCTTTTCAGTACATTAGTCAAACCTCTTGTCTATCTATCCATGTTCTACTTCTTTAGCAATCCAAGGTCAAGCTTCGGAAGTAACTACGCTGTTTTGGTGTGCCTTGTGTACTGTGTAACTGGCATGGCTTATGCAATAGCAATTTATTTTGAGCCTGCTCCTGCTCAGCTGGGGTCGGTGCTTCTCCCTGTTGTTATGACTCTCATTTCAAACCAGACAAGAGAAGGTCTCTTTATGAAGATCCTTATAAAAATGTGTTACCCAAATTGGGCTTTGGAGGCCTTTATTATTGCAAATGCTGAAAGGTACACTGGGGTGTGGTTGATAACTCGTTGTAGTTCACTGATGACTAGCAGTTATAATGTCAATGATTGGGCTACATGTTTAGTTGTTCTCATTTTTTATGGTATAGTTGCTCGAGTTGTGGCATTCATTTGTCTCATGATCACCCAAAAGAAGTGA 3264 0.4066 MRNHVFYIALFFLFSFTLLPRIHCAEGTFAPSFYTDEIYKELQNIALLLNKDIKSSLDFCIKDPKKDWEEAFDFTGRLDFVDSCVKKKGDFRDRICTAAEIRYYFHGFLAQGAATDNYVKPNKNCNLTSWVSGCEPGWGCSTGVNIDLKKDTKEIPKRTKNCKPCCEGFFCPQGLTCMIPCPLGSYCPLAKLNNQTGLCDPYSYQIPQGEPGHTCGSADIWTGVVNNSDIFCSPGSYCPTTTRKVSCDRGYYCRMGSTHQNPCSKFSQCNPNTTNQNMHAYGALLIVALSTVLIFIYNCSDQVLATRERRKAKSREAAARQVRETVQARERWKIAKDAAKRNKTGLQDQLVRTFSRRKSSKQAEQVNPATGNSVLPPMPPEQPSAATKDPTKEPSDLTKMLNSLENDPNSNEGFNLKIGDKNIKKQLPKGKNLHTQSQILRYAYGQIEKEKAQQDKNNLTFSGVISMAADGEEVRSRPEIEVAFKDLTLTLKGKKKHVMRCVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKIRGCTMTGSILINGKPESIHCYQKIIGYVPQDDIVHGNLTVEENLRFSARCRLSDDLPKPDKVLIVERVIETLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSASSSLLLKALRREAAEGVNVCMVLHQPSYTLFRTFDDIIFLAKGGLTAYHGPVKKVEEYFAGIGIVVPDRVNPPDHYIDILEGLVKPNEGVTHQQLPVRWMLHNGYPVPPDMLHFADEISASSSSTNINHAAKSTDEATDQSFAGEFWEDMKSNVQLQKDHIEATFLRTKDLSNRRTPGISRQYRYYLGRIGKQQLREAKSQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLCKIAALRSFSLDKLQYWRESASGISSLAHFLSKDTIDLFSTLVKPLVYLSMFYFFSNPRSSFGSNYAVLVCLVYCVTGMAYAIAIYFEPAPAQLGSVLLPVVMTLISNQTREGLFMKILIKMCYPNWALEAFIIANAERYTGVWLITRCSSLMTSSYNVNDWATCLVVLIFYGIVARVVAFICLMITQKK 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06966 1087 FunFam ABC transporter G family member 24 476 718 - -
Vivi1g06966 1087 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 482 723 IPR003439 GO:0005524
Vivi1g06966 1087 SMART AAA_5 508 700 IPR003593 GO:0016887
Vivi1g06966 1087 MobiDBLite consensus disorder prediction 388 415 - -
Vivi1g06966 1087 ProSitePatterns ABC transporters family signature. 623 637 IPR017871 GO:0005524|GO:0016887
Vivi1g06966 1087 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 236 1075 - -
Vivi1g06966 1087 MobiDBLite consensus disorder prediction 335 415 - -
Vivi1g06966 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 705 IPR027417 -
Vivi1g06966 1087 Pfam ABC-2 type transporter 680 1087 IPR043926 GO:0140359
Vivi1g06966 1087 Gene3D - 470 717 IPR027417 -
Vivi1g06966 1087 CDD ABCG_EPDR 480 706 - -
Vivi1g06966 1087 Pfam ABC transporter 502 650 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06966 Vivi-Chr1 166923667 166931088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06966 509 702 Calmodulin-binding Proteins AT2G36910 28.713 4.08e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06966 - - gmx:100780238 1867.05