Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06965 ATGGATCGGGAAGAATATCTGCGGAAGTGTTCCAATATGAAATGCCAAAGAGTTCAGGTAGATGAATCATACGTGCCTTCCCTTCAAGATGATGAAATGGAAATTGAGCATTTGCTTGAAGAACCTAGAAGTGATCACGTTTCATTGGATGGCAGTTTAGCTTCTGACACAGCTTTGAATGACAAGAATGATTTGGAACTGGAGGTCCTTGATGGATTCCTGGACGAGGGATTCCTGGATGATGTTGACATCAACGATCTTGAAGGAACTGATGGTTTCACCGATGTATCTGGAGGGTATTTCTTAGATTTTGATTTTGCCAAAGTTGAGTTACTAGGCTCTGGTGCTTATGAAGACTCACTTTTGGAAAATTCAAATTCGGAAAGTCAATCTCCCGGATTAAGTGGAAGTAGCACCGTTGGTGGGATATCAGAATCAGCAAAAGCACCCAATAGTACACAATCTGAATGCAAAATTGAATCTCTAGATGAGACAGTCACCAATGATACACATGGTGTCTTCAGGAACAATCCAAGTCAACCATCAAATGTAGGTTGCATGTACAACATTTCACTTGATATACAGCATCTGCATGAGCTGAATAATGGTTATCCTTTAGGTGGCAGTATATTGTCTTGTAAGACAGAAAATGTTACTGTTGAGAATTGCCAATCTGCTCCACCTAGAGCGAAGAGATTCCGAAAGCCTACTAAGAGGTATATTGAAGAATCTTCAAATTCGAGGTCAAAAGAAAAAGTACCAACTACAGGTGCAAAAAACAAAAGACGGAGTCTGTCATTATGTAATGAACTTCATACAAAAATGAAAGGATTGAAGAATATTCCAAGTGAAAAGTCTAGTAATGGCAATAGTGAAGTAACTCTTACCGAGTTGCAATGCTGCAAGAAGCTGCCAAAGAAAGAGGAATTTGAGTATGACAATGAGCCTTTTTCCTCGGAGGAGTTTGAGGATGAGTTTGAGGAAGAATTTGAGGATGAACGTTCGCCACCAAAAAGAAGTAGATCAAAAGATCGAAGAAAGCATCAAAGGATGTGGACAACCGCTGAAGTGACGAAGTTGGTTGATGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATACAGAGGTTTTTGTTTTCTGCTTCAGGCTACCGAACTCCTACAGATATCAGGGACAAGTGGCGTAACCTTCTCCGAGCCAGTTCTGCACAGAAATTCATTCAGAAAGAGGATGAGGAAAACGACAAGATTTCCCCGCGTTCCTTACCTTTCAGTGTGGCAAGCCGAGTGCTGGAATTGGCTAAAATTCACCCATACCCAAAGCGACGAAACTCAAAGAGATCGTCTGATAGCCAAGTCGGCTCTTCTGTCACAGCCAGTCAAAGCAGTGGTTCTTCTATTAGTCTTGGCAGAAGAAATGTCCGTAGGAAGAAGTGTACTTAG 1446 0.4142 MDREEYLRKCSNMKCQRVQVDESYVPSLQDDEMEIEHLLEEPRSDHVSLDGSLASDTALNDKNDLELEVLDGFLDEGFLDDVDINDLEGTDGFTDVSGGYFLDFDFAKVELLGSGAYEDSLLENSNSESQSPGLSGSSTVGGISESAKAPNSTQSECKIESLDETVTNDTHGVFRNNPSQPSNVGCMYNISLDIQHLHELNNGYPLGGSILSCKTENVTVENCQSAPPRAKRFRKPTKRYIEESSNSRSKEKVPTTGAKNKRRSLSLCNELHTKMKGLKNIPSEKSSNGNSEVTLTELQCCKKLPKKEEFEYDNEPFSSEEFEDEFEEEFEDERSPPKRSRSKDRRKHQRMWTTAEVTKLVDGISEYGVGRWTDIQRFLFSASGYRTPTDIRDKWRNLLRASSAQKFIQKEDEENDKISPRSLPFSVASRVLELAKIHPYPKRRNSKRSSDSQVGSSVTASQSSGSSISLGRRNVRRKKCT 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06965 481 ProSiteProfiles Myb-like domain profile. 344 399 IPR001005 -
Vivi1g06965 481 MobiDBLite consensus disorder prediction 312 351 - -
Vivi1g06965 481 Pfam Myb-like DNA-binding domain 352 399 IPR001005 -
Vivi1g06965 481 MobiDBLite consensus disorder prediction 438 481 - -
Vivi1g06965 481 SMART sant 348 401 IPR001005 -
Vivi1g06965 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 344 403 IPR017930 -
Vivi1g06965 481 CDD SANT_TRF 350 400 - -
Vivi1g06965 481 MobiDBLite consensus disorder prediction 122 157 - -
Vivi1g06965 481 MobiDBLite consensus disorder prediction 314 331 - -
Vivi1g06965 481 MobiDBLite consensus disorder prediction 226 261 - -
Vivi1g06965 481 SUPERFAMILY Homeodomain-like 346 413 IPR009057 -
Vivi1g06965 481 MobiDBLite consensus disorder prediction 450 471 - -
Vivi1g06965 481 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 7 452 - -
Vivi1g06965 481 Gene3D - 338 451 - -
Vivi1g06965 481 MobiDBLite consensus disorder prediction 236 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06965 Vivi-Chr1 166868387 166874792 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi1g06965 Myb_DNA-binding 3.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06965 - - gmx:100810255 525.013