Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06960 ATGGAGGCAATTGCTAATACTATTACCAATGGTCACGTTCAAGAAACTTTTTGTTTGAGCAAGAATGGTGGTCCTGGTGCAGTTGCTATCGCTGGTGCTGGTGGTGATCCACTCAACTGGGGTGCGGCGGCGGAGTCTTTAATGGGGAGTCATTTGGATGAGGTGAAGCGTATGGTGGCGGAGTATCGTAAACCGATTGTTAAAATCGGTGGGGAGACGCTCACCATTGGTCAGGTGGCTGGAATTGCTTCTCATGATAGTGGTGTTCGGGTGGAGCTTTCGGAGTCGGCGAGGGTCGGCGTTAAGGCGAGTAGTGATTGGGTGATGGAGAGCATGAATAAAGGGACGGACAGTTATGGTGTTACCACCGGTTTTGGTGCTACTTCTCACCGGAGAACCAAACAAGGTGGTGCCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAATCCAATTGTACATTACCACACACTGCAACAAGAGCTGCAATGCTTGTTAGAATCAACACTCTTCTTCAAGGATACTCAGGAATCAGATTTGAAATCTTGGAAGCAATCACAAAGCTTCTAAACAATAACATCACTCCATGTTTACCGCTTCGCGGAACAATCACGGCTTCCGGTGATCTTGTTCCACTTTCATACATTGCTGGTTTGTTAACCGGGAGGCCGAACTCGAAGGCCGTTGGACCGTCCGGTGAAATTCTCAATGCTAAAGAAGCTTTTAAGCTAGCGAATATTGATTCTGAGTTCTTTGAGTTGCAGCCAAAAGAAGGTCTTGCTCTTGTTAATGGAACTGCTGTTGGTTCTGGTTTGGCTTCTATTGTTCTGTTTGAAGCAAATGTGTTGGCTGTTTTGTCTGAAGTTATGTCAGCGATTTTCTCCGAAGTTATGCAAGGGAAACCGGAGTTTACCGATCATTTGACGCATAAGTTGAAGCATCATCCTGGTCAGATTGAGGCTGCTGCCATCATGGAACATATTTTGGATGGAAGTGCTTATGTTAAAGCTGATAAGAAGTTACATGAGATGGATCCTTTGCAGAAACCGAAACAAGATCGTTATGCGCTTAGAACTTCGCCTCAATGGCTTGGTCCTTTGATTGAAGTGATTAGATTCTCAACCAAGTCAATTGAAAGAGAGATTAACTCTGTCAACGATAACCCTTTGATCGATGTATCGAGGAACAAGGCGTTACATGGTGGTAACTTTCAAGGGACTCCTATTGGAGTTTCGATGGATAACACGCGTTTAGCTCTTGCTTCAATTGGTAAGCTCATATTCGCGCAATTCTCTGAACTTGTTAACGATTTTTACAACAATGGTTTGCCTTCGAATCTTTCTGGTGGTAGGAATCCAAGTTTGGACTACGGTTTCAAAGGCTCTGAAATCGCTATGGCTTCTTATTGCTCCGAGATACAATACCTTGCTAACCCTGTCACCACTCATGTCCAAAGTGCTGAGCAACATAACCAGGACGTTAACTCTCTCGGTTTGATTTCGTCGAGAAAAACAAACGAGGCTATCGAGATTCTAAAGCTCATGTCTTCTACTTACTTGATCGCGCTTTGTCAAGCGATTGACTTAAGGCATTTGGAGGAGAATTTGCGTAACGCTGTGAAGAACACTGTGAGTCAAGTTGCTAAGAGAACACTCACAACCGGTGTCAACGGAGAGCTTCATCCTTCTCGATTCTGCGAGAAAGATTTACTCAAAGTTGTCGACAGAGAGTACGTATTCGCCTACGCTGATGATCCTTGTCTAGCAACATACCCTTTGATGCAAAAGCTACGACACGTGCTTGTTGATCACGCATTGGTGAATGTGGAAGGGGAGAAGAATTTGAACACATCAATCTTTCAAAAGATTGCAACCTTCGAAGACGAGTTGAAGGCTATCTTACCGAAAGAAGTTGAAAGCGTAAGAGCTGCATTCGAAAACGGACAATGTGGAATTCCAAACAAGATCAAGGAATGTAGGTCTTACCCGTTGTACAAGTTTGTCAGAGAGGAGTTGGGAACCGCGTTGTTGACGGGCGAAAAGGCGATATCCCCGGGCGAAGAGTGCGACAAAGTGTTCACAGCTATGTGTCAAGGTAAAATTGTTGATCCTCTGATGGAATGTCTTGGAGAATGGAATGGTGCACCTCTTCCAATTTGTTAA 2184 0.4441 MEAIANTITNGHVQETFCLSKNGGPGAVAIAGAGGDPLNWGAAAESLMGSHLDEVKRMVAEYRKPIVKIGGETLTIGQVAGIASHDSGVRVELSESARVGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFKLANIDSEFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEVMSAIFSEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKADKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLIFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGSEIAMASYCSEIQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTYLIALCQAIDLRHLEENLRNAVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYADDPCLATYPLMQKLRHVLVDHALVNVEGEKNLNTSIFQKIATFEDELKAILPKEVESVRAAFENGQCGIPNKIKECRSYPLYKFVREELGTALLTGEKAISPGEECDKVFTAMCQGKIVDPLMECLGEWNGAPLPIC 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06960 727 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 209 225 IPR022313 GO:0016841
Vivi1g06960 727 Gene3D - 540 661 IPR023144 -
Vivi1g06960 727 NCBIfam phenylalanine ammonia-lyase 36 716 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vivi1g06960 727 FunFam Phenylalanine ammonia-lyase 28 273 - -
Vivi1g06960 727 SUPERFAMILY L-aspartase-like 36 727 IPR008948 GO:0003824
Vivi1g06960 727 CDD PAL-HAL 72 537 IPR001106 -
Vivi1g06960 727 FunFam Phenylalanine ammonia-lyase 274 580 - -
Vivi1g06960 727 Gene3D Fumarase/aspartase (Central domain) 274 722 - -
Vivi1g06960 727 Gene3D - 28 273 IPR024083 -
Vivi1g06960 727 PANTHER HISTIDINE AMMONIA-LYASE 31 727 IPR001106 -
Vivi1g06960 727 FunFam Phenylalanine ammonia-lyase 540 661 - -
Vivi1g06960 727 Pfam Aromatic amino acid lyase 74 549 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06960 Vivi-Chr1 166679511 166683993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06960 36 727 Monolignol Biosynthesis Gene Families AT2G37040 83.092 0.0 1229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06960 K10775 - gmx:100803857 1272.69