Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06955 ATGTCTACCTCTGCAACCTCCCTAGCCCTTCCCTCTCTTCGAACCAAAACCTCTACATGTTTCTCTGCACTCCCTTCCTTCTCACTCAACACGAATTTCAAACCCTTTTCATGTGGCTCTCTTCGTAAAACGCTGTCTTTGAGTCACCGGTTTGTTACCCGTGTTGCTGTTTCGTCTGAGTTTGACCAGGAAGAGGATACCTTTGAGGGTGGAGATACTAGGAGTTACTCTGCTAACCAGAGGCTGTTTGTTGGGAACCTTCCGTTCAGTGTGGATAGTGCGCAACTCGCGGAGATTTTTGAAAGTGCTGGGAATGTTGAGATGGTTGAGGTGATTTATGATAAGACTACTGGGAGAAGCAGGGGATTTGGGTTTGTTACTATGTCTTCTGCTGCTGAAGTTGAAGCTGCTGCTCAGCAGTTCAATGGTTATCTAGTGGATGGAAGGGAATTGAGAGTGAATTCTGGACCTCCTCCACCTCGTGAAAATTCTCGTTTTGGTGACAATCCTCGTTATGGCGGTGAGAATTCTCGATTTGGTGACAATCCTCGTTATGGCGGTGAGAATTCTCGTTTTGGTGATAGTTCTGGTTCTAGAGGTCCTCCAAGAGGTGGTTCAGATAGCGAACACCGGGTTCACGTGGGTAATCTTGCTTGGGGTGTTGACAACATGGCACTTGAGTCATTGTTCCAAGAACAAGGAAGGGTTATAGAAGCTAAGGTAATCTATGATAGGGAAAGTGGAAGGTCTAGAGGGTTTGGATTTGTGACTTTCGGTAGTGCTGAAGAGGTCAATGGTGCTATTCAATCCTTAGATGGCGTGGACTTGAATGGAAGAGCTATAAGGGTCTCACCCGCAGATAGTAGACCAAAGCGTCAATTTTGA 885 0.4633 MSTSATSLALPSLRTKTSTCFSALPSFSLNTNFKPFSCGSLRKTLSLSHRFVTRVAVSSEFDQEEDTFEGGDTRSYSANQRLFVGNLPFSVDSAQLAEIFESAGNVEMVEVIYDKTTGRSRGFGFVTMSSAAEVEAAAQQFNGYLVDGRELRVNSGPPPPRENSRFGDNPRYGGENSRFGDNPRYGGENSRFGDSSGSRGPPRGGSDSEHRVHVGNLAWGVDNMALESLFQEQGRVIEAKVIYDRESGRSRGFGFVTFGSAEEVNGAIQSLDGVDLNGRAIRVSPADSRPKRQF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06955 294 SUPERFAMILY RNA-binding domain, RBD 204 293 IPR035979 GO:0003676
Vivi1g06955 294 CDD RRM2_NsCP33_like 211 286 - -
Vivi1g06955 294 MobiDBLite consensus disorder prediction 149 210 - -
Vivi1g06955 294 Gene3D - 55 205 IPR012677 -
Vivi1g06955 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Vivi1g06955 294 PANTHER OS02G0815200 PROTEIN 26 290 - -
Vivi1g06955 294 SMART rrm1_1 211 284 IPR000504 GO:0003723
Vivi1g06955 294 SMART rrm1_1 81 154 IPR000504 GO:0003723
Vivi1g06955 294 SUPERFAMILY RNA-binding domain, RBD 79 187 IPR035979 GO:0003676
Vivi1g06955 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Vivi1g06955 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 282 IPR000504 GO:0003723
Vivi1g06955 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 152 IPR000504 GO:0003723
Vivi1g06955 294 Gene3D - 206 294 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06955 Vivi-Chr1 166176394 166178746 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06955 82 293 Eukaryotic Initiation Factors Gene Family AT4G34110 26.887 1.68e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06955 - - gmx:100786275 327.02