Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06952 ATGGTTTCTGTTAAATCAAGATCAGTAAGGTTTCATGATGATCTTGAAAAAGAGAAGTTAAAGGAAGTCGAAGAAAATCAAATGGAAATGACCACGACGTATGAGATGAGTAATCAGCACAAGCATGTAAGGGATGCGAAAAACAAGTCATCATCAAATGTAAAAGAACTTTCAAGAGTGTTTTCTGAGGATTATGATGCAGAAGAGATTTTAATATTAGATCCTAGAGGGCCTAGAGTGAATTTATGGAACAAAATATTCTTAGCAGCGTGTTTGATATCGTTGTTCGTGGATCCACTTTTCTTTTACTTACCTGTTGCTAAGAAAGAAAAGTGCATTGATATGTCACTTGGTCTTGAAGTTTCACTTACCATAATAAGGTCATTGGTTGATGCGTTTTACATTGTTCAGATTTATGTTAAGTTTCAAACCGCTTATATTGCTCCTTCGTCTCGTGTCTCTGGTAGAGGAGAACTAATTATTGATTCCTCGAAGATTGCATCGAATTATCTCAGTAGAGACTTTTGGTTCGATCTTGTTGCTGCACTACCGCTTCCTCAGGTATTGATTTGGGCTGTAATTCCAAATCTGAGGGGTTCGGAAATGATTGCATCGAGGCATATATTGCGTCTCGTGTCCATTTTCCAGTACTTATTGAGGTTGTATCTTATTTATCCTCTATCATCCGTAATTGTCAAGGCGAATGGAGTAATGATGGAGAAAGCTTGGGCTGGTGCAGCTTATAATTTGACACTCTATATGCTTGCTAGTCATGTTTTAGGATCTACATGGTATCTGTTATCAATCGAAAGACAAGATGAATGCTGGAAGAAAGCTTGTACACTTGAATTTTCACATTGTCGGTATCATTATCTTGATTGTCGAAGCCTTGGTGATCCGAATAGGAATTCTTGGCTTAGATCAAGCAATGTCTCGGGTCTATGTGATGATAACAGCGCCTTCTTTCAATTTGGAATTTTTGCCGATGCTTTGACTTTGGAGATAACAAGCTCAAAATTCTTAAACAAATACTATTACTGTCTTTGGTGGGGATTAAGAAATCTAAGCTCTGCAGGACAGAATCTCTTAACAAGTACACATGTTCCAGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTCATAGGCAATATGCAAACATACCTTCAATCGACCACTATACGGCTGGAGGAGTGGAGAATAAGAAGGACAGATACAGAAAGATGGATGCATCACAGGCAGCTCCCTCGTTACCTGAAGCAAAATGTTCGACGACATGACCAATTCAGATGGGTTGCTACTCGTGGTGTCGACGAAGAAGCTATTCTTAGAGACCTTCCCGTTGATCTACGACGTGATATTAAACGCCACCTTTGCCTCAATCTAGTTAGACAAGTGCCACTATTTGATCAGATGGATGACAGAATGTTAGATGCAATATGTGAAAGGCTGAAACCAACTCTATGCAGTCCCGGAACTTGCATAGTTCGCGAATGCGACCCTGTCAACGAAATGCTCTTCATCGTTCGAGGGCGTCTAGATTCTTGCACAACCAACGGTGGCAGAACTGGTTTCTTCAACACCTGCAGAATAGGCTCGGGCGACTTCTGTGGCGAAGAGCTTTTACCATGGGCCCTAGACCCTCGTCCGACCGTCGTACTTCCTTCATCAACTCGAACGGTGAAAGCCATAACCGAAGTTGAAGCTTTTGCACTCATTGCCGAGGATTTAAAATTCGTAGCAGCGCAATTCCGTCGGTTACATAGCAAACAACTGAGACAAACCTTTAGATTCTATTCACATCAGTGGCGGACATGGGCTGCATGTTTTATACAAGCGGCTTGGTTTCGGTATAAAAGAATGAAAGAGATGAATGAGGTTAAGGAAAAGGAGAATCTTATGATGATGGCAAATGTGAAATGTTATGGACATGATGATTCTCAGTATTTTTCTGCACCTTTGCAGGCTCCAATGGGATCAAGTTATTCAATGTATTCTGGAAAACTTGTAGGTAGTTTAAGGAAAGGTAGGAGTATGAGATATGGGTCTGAACTTGATCTTCTTGGTGCATTAAGGAAGCCTCTTGAACCAGATTTTAATGAAGATGGTGATTAA 2136 0.405 MVSVKSRSVRFHDDLEKEKLKEVEENQMEMTTTYEMSNQHKHVRDAKNKSSSNVKELSRVFSEDYDAEEILILDPRGPRVNLWNKIFLAACLISLFVDPLFFYLPVAKKEKCIDMSLGLEVSLTIIRSLVDAFYIVQIYVKFQTAYIAPSSRVSGRGELIIDSSKIASNYLSRDFWFDLVAALPLPQVLIWAVIPNLRGSEMIASRHILRLVSIFQYLLRLYLIYPLSSVIVKANGVMMEKAWAGAAYNLTLYMLASHVLGSTWYLLSIERQDECWKKACTLEFSHCRYHYLDCRSLGDPNRNSWLRSSNVSGLCDDNSAFFQFGIFADALTLEITSSKFLNKYYYCLWWGLRNLSSAGQNLLTSTHVPEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPRYLKQNVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCSPGTCIVRECDPVNEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKEMNEVKEKENLMMMANVKCYGHDDSQYFSAPLQAPMGSSYSMYSGKLVGSLRKGRSMRYGSELDLLGALRKPLEPDFNEDGD 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06952 711 ProSiteProfiles cAMP/cGMP binding motif profile. 475 560 IPR000595 -
Vivi1g06952 711 Pfam Ion transport protein 82 401 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi1g06952 711 Gene3D Helix hairpin bin 403 466 - -
Vivi1g06952 711 PRINTS EAG/ELK/ERG potassium channel family signature 438 445 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g06952 711 PRINTS EAG/ELK/ERG potassium channel family signature 370 381 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g06952 711 PRINTS EAG/ELK/ERG potassium channel family signature 344 361 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g06952 711 PRINTS EAG/ELK/ERG potassium channel family signature 138 147 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g06952 711 PRINTS EAG/ELK/ERG potassium channel family signature 127 137 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g06952 711 PRINTS EAG/ELK/ERG potassium channel family signature 255 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g06952 711 PRINTS EAG/ELK/ERG potassium channel family signature 388 397 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g06952 711 SMART cnmp_10 475 606 IPR000595 -
Vivi1g06952 711 Gene3D - 87 399 - -
Vivi1g06952 711 SUPERFAMILY cAMP-binding domain-like 405 597 IPR018490 -
Vivi1g06952 711 SUPERFAMILY Voltage-gated potassium channels 74 397 - -
Vivi1g06952 711 CDD CAP_ED 475 606 IPR000595 -
Vivi1g06952 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 45 651 - -
Vivi1g06952 711 FunFam Cyclic nucleotide-gated ion channel 1 473 591 - -
Vivi1g06952 711 Gene3D Jelly Rolls 473 593 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06952 Vivi-Chr1 166170564 166174085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06952 53 709 Ion Channels AT2G28260 64.384 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06952 K05391 - gmx:100815543 1143.26