Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06945 ATGAATACATTCATGGATTCAAGAGATGATAAGTCAGCAAAAAGAGATGAAAGGTGTTTAGATCCTCAGCTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCGGCGGTGAACAGTAAAGTGTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGAAGTGTTAACTTCATGAATTGTCCAAAGGTGGAGCCTTTGATTCCATGCAGAGTTTTTGAGGTTAAGTTTATGGCTGATCCTGAGACTGATGAGGTTTATGCTAAGCTTAAGCTTGTTCCTTTGAGTGGAAATGGAAATGATGGTGTAGATTGTGACAATGATGTTGTTGGTGTTGAGAATCAAGATAAGCCGGCTTCGTTTGCGAAGACATTGACGCAATCTGATGCGAATAATGGTGGAGGTTTTTCGGTTCCTAGGTATTGTGCGGAGACGATTTTTCCGCGGTTGGATTACGCGGCGGATCCTCCTCTTCAGAATATTTTGGCTAAGGATGTTCACGGCGAGACGTGGAAGTTTAGGCATATTTATAGGGGGACGCCGAGGAGGCATCTTTTGACTACCGGTTGGAGTACTTTTGTTAATCATAAGAAGCTTCTTGCTGGTGATTCGATTGTGTTTTTGAGGGCGGAGAATGGTGATCTTTGTGTTGGGATTCGACGGGCGAAGAAGGGGATTGGTGGTGGACATGAGGATCCGTCAGGGTGGAATCCGGTTGGAGAAAAGTTTCCTCTACCTTGGTTCGCGCAGAACGAGAATCAAATGATGAGAAACTTTAACAATAACAATAACAACAACAATGGTTTGAACTCGAGCGCGAATGTGACGGGGAGGGAAAGAGTTAGGCCAGAAGTGGTCCTTGAAGCGGTAACTTTAGCTGCAAATAAGCAACCGTTTGAGGTTGTTTACTATCCTCGTGCAAGTACACCGGAGTTTTGTGTTAAGGCGCATTTGGTAGAGGCGGCAATGCAGATTCGATGGTGTTCTGGAATAAGATTCAAGATGCCATTTGAAACCGAGGATTCGTCTCGAATAAGTTGGTTTATGGGAATCGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTCTGGCCTAATTCACCTTGGAGACTTCTTCAGGTTAAATGGGATGAACCGGATTTACTGCAAAATGTGAGAAGGGTGAGTCCATGGTTGGTTGAGTTAGTAGCAAACATTCCATCAATAAACCTTTCGCCTTTCTCACAACCAAGAAAGAAATTGAGAATGACGCCAAACTCAGATTTCCCCCTCGACGGCCAAATTCCGGTGCCAACTTTTCCTAGTAACCTTCTAGGTACGAGCAACCTATTTCGTTGTCTACCCGAAAATACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTACGGTCTTCCAATATCGGATCTCCACCTCAGTAAAGTTCAGTCAGGTCTATTTCCGGCCGGTTTCGTGCCTTTTGATCATGCTGCTAAACTACCACCTAATGTCTCTAATAACCTAATGATGCAAAAATCTAGCATGAGTGAGAATGTCTCTTGCTTACTATCTATGGCAAGTTCTACTCAGCCTTCGAGGAAATTCGATGACGAGAAGAAACCTCAGCTCGTGCTTTTCGGCCAAAAAATTCTAACCGAGCAACAGATCTCTAACGACCGTTCATCAGACGGAAATGCCGATAAAATGAGTAATTTTTCTGATGGTTCGGGAACTCCTCTTCATCAACAAGGCTTGCGAAAACGTTCTTGTGAAACCGAGGCGAGTTTGGAGAGTACTGATCACTGTAAAGTTTTTCTCGAATCAGAAGATGTCGGTCGAACAATTGATCTATCTTTACTTGAATCTTATGATGAACTGTACAGAAAACTCGCAGACATGTTTGGCATCGAAAAATACGAAAAGGTAAGCCGCGTGCTCTACACCGATATATCAGGAGCAGTCAAACACATTGGAGATGAACCATTCAGCAACTTCACAAGAACAGCAAGGAGATTGACAATTCTAATGGACTCAAACAAATAA 2022 0.4382 MNTFMDSRDDKSAKRDERCLDPQLWHACAGGMVQMPAVNSKVYYFPQGHAEHACGSVNFMNCPKVEPLIPCRVFEVKFMADPETDEVYAKLKLVPLSGNGNDGVDCDNDVVGVENQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLLAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPSGWNPVGEKFPLPWFAQNENQMMRNFNNNNNNNNGLNSSANVTGRERVRPEVVLEAVTLAANKQPFEVVYYPRASTPEFCVKAHLVEAAMQIRWCSGIRFKMPFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRMTPNSDFPLDGQIPVPTFPSNLLGTSNLFRCLPENTPAGMQGARHAHYGLPISDLHLSKVQSGLFPAGFVPFDHAAKLPPNVSNNLMMQKSSMSENVSCLLSMASSTQPSRKFDDEKKPQLVLFGQKILTEQQISNDRSSDGNADKMSNFSDGSGTPLHQQGLRKRSCETEASLESTDHCKVFLESEDVGRTIDLSLLESYDELYRKLADMFGIEKYEKVSRVLYTDISGAVKHIGDEPFSNFTRTARRLTILMDSNK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06945 673 CDD B3_DNA 121 222 IPR003340 GO:0003677
Vivi1g06945 673 ProSiteProfiles PB1 domain profile. 592 672 IPR000270 GO:0005515
Vivi1g06945 673 MobiDBLite consensus disorder prediction 549 578 - -
Vivi1g06945 673 Pfam Auxin response factor 290 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi1g06945 673 FunFam Auxin response factor 120 224 - -
Vivi1g06945 673 Gene3D - 588 673 - -
Vivi1g06945 673 FunFam Auxin response factor 328 401 - -
Vivi1g06945 673 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi1g06945 673 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Vivi1g06945 673 SUPERFAMILY DNA-binding pseudobarrel domain 113 233 IPR015300 -
Vivi1g06945 673 MobiDBLite consensus disorder prediction 549 585 - -
Vivi1g06945 673 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Vivi1g06945 673 SMART B3_2 122 224 IPR003340 GO:0003677
Vivi1g06945 673 Gene3D - 327 401 - -
Vivi1g06945 673 Gene3D - 120 224 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06945 Vivi-Chr1 165783528 165787201 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06945 17 670 B3 DNA Binding Superfamily AT4G30080 55.000 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi1g06945 B3 3.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06945 - - gmx:100796522 971.459