Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06944 ATGACTTTTCAGAAATTTTGCAGTGAAAGTTTTGTGAAGATGAATACATTCATGGATTCAAGAGATGATAAGTCAGCAAAAAGAGATGAAAGGTGTTTAGATCCTCAGCTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCGGCGGTGAACAGTAAAGTGTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGAAGTGTTAACTTCATGAATTGTCCAAAGGTGGAGCCTTTGATTCCATGCAGAGTTTTTGAGGTTAAGTTTATGGCTGATCCTGAGACTGATGAGGTTTATGCTAAGCTTAAGCTTGTTCCTTTGAGTGGAAATGGAAATGATGGTGTAGATTGTGACAATGATGTTGTTGGTGTTGAGAATCAAGATAAGCCGGCTTCGTTTGCGAAGACATTGACGCAATCTGATGCGAATAATGGTGGAGGTTTTTCGGTTCCTAGGTATTGTGCGGAGACGATTTTTCCGCGGTTGGATTACGCGGCGGATCCTCCTCTTCAGAATATTTTGGCTAAGGATGTTCACGGCGAGACGTGGAAGTTTAGGCATATTTATAGGGGGACGCCGAGGAGGCATCTTTTGACTACCGGTTGGAGTACTTTTGTTAATCATAAGAAGCTTCTTGCTGGTGATTCGATTGTGTTTTTGAGGGCGGAGAATGGTGATCTTTGTGTTGGGATTCGACGGGCGAAGAAGGGGATTGGTGGTGGACATGAGGATCCGTCAGGGTGGAATCCGGTTGGAGAAAAGTTTCCTCTACCTTGGTTCGCGCAGAACGAGAATCAAATGATGAGAAACTTTAACAATAACAATAACAACAACAATGGTTTGAACTCGAGCGCGAATGTGACGGGGAGGGAAAGAGTTAGGCCAGAAGTGGTCCTTGAAGCGGTAACTTTAGCTGCAAATAAGCAACCGTTTGAGGTTGTTTACTATCCTCGTGCAAGTACACCGGAGTTTTGTGTTAAGGCGCATTTGGTAGAGGCGGCAATGCAGATTCGATGGTGTTCTGGAATAAGATTCAAGATGCCATTTGAAACCGAGGATTCGTCTCGAATAAGTTGGTTTATGGGAATCGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTCTGGCCTAATTCACCTTGGAGACTTCTTCAGGTTAAATGGGATGAACCGGATTTACTGCAAAATGTGAGAAGGGTGAGTCCATGGTTGGTTGAGTTAGTAGCAAACATTCCATCAATAAACCTTTCGCCTTTCTCACAACCAAGAAAGAAATTGAGAATGACGCCAAACTCAGATTTCCCCCTCGACGGCCAAATTCCGGTGCCAACTTTTCCTAGTAACCTTCTAGGTACGAGCAACCTATTTCGTTGTCTACCCGAAAATACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTACGGTCTTCCAATATCGGATCTCCACCTCAGTAAAGTTCAGTCAGGTCTATTTCCGGCCGGTTTCGTGCCTTTTGATCATGCTGCTAAACTACCACCTAATGTCTCTAATAACCTAATGATGCAAAAATCTAGCATGAGTGAGAATGTCTCTTGCTTACTATCTATGGCAAGTTCTACTCAGCCTTCGAGGAAATTCGATGACGAGAAGAAACCTCAGCTCGTGCTTTTCGGCCAAAAAATTCTAACCGAGCAACAGATCTCTAACGACCGTTCATCAGACGGAAATGCCGATAAAATGAGTAATTTTTCTGATGGTTCGGGAACTCCTCTTCATCAACAAGGCTTGCGAAAACGTTCTTGTGAAACCGAGGCGAGTTTGGAGAGTACTGATCACTGTAAAGTTTTTCTCGAATCAGAAGATGTCGGTCGAACAATTGATCTATCTTTACTTGAATCTTATGATGAACTGTACAGAAAACTCGCAGACATGTTTGGCATCGAAAAATACGAAAAGGTAAGCCGCGTGCTCTACACCGATATATCAGGAGCAGTCAAACACATTGGAGATGAACCATTCAGCAACTTCACAAGAACAGCAAGGAGATTGACAATTCTAATGGACTCAAACAAATAA 2061 0.4357 MTFQKFCSESFVKMNTFMDSRDDKSAKRDERCLDPQLWHACAGGMVQMPAVNSKVYYFPQGHAEHACGSVNFMNCPKVEPLIPCRVFEVKFMADPETDEVYAKLKLVPLSGNGNDGVDCDNDVVGVENQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLLAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPSGWNPVGEKFPLPWFAQNENQMMRNFNNNNNNNNGLNSSANVTGRERVRPEVVLEAVTLAANKQPFEVVYYPRASTPEFCVKAHLVEAAMQIRWCSGIRFKMPFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRMTPNSDFPLDGQIPVPTFPSNLLGTSNLFRCLPENTPAGMQGARHAHYGLPISDLHLSKVQSGLFPAGFVPFDHAAKLPPNVSNNLMMQKSSMSENVSCLLSMASSTQPSRKFDDEKKPQLVLFGQKILTEQQISNDRSSDGNADKMSNFSDGSGTPLHQQGLRKRSCETEASLESTDHCKVFLESEDVGRTIDLSLLESYDELYRKLADMFGIEKYEKVSRVLYTDISGAVKHIGDEPFSNFTRTARRLTILMDSNK 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06944 686 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 31 682 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi1g06944 686 SUPERFAMILY DNA-binding pseudobarrel domain 126 246 IPR015300 -
Vivi1g06944 686 FunFam Auxin response factor 341 414 - -
Vivi1g06944 686 Gene3D - 133 237 IPR015300 -
Vivi1g06944 686 SMART B3_2 135 237 IPR003340 GO:0003677
Vivi1g06944 686 Pfam Auxin response factor 303 386 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi1g06944 686 Pfam B3 DNA binding domain 135 236 IPR003340 GO:0003677
Vivi1g06944 686 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Vivi1g06944 686 MobiDBLite consensus disorder prediction 562 598 - -
Vivi1g06944 686 FunFam Auxin response factor 133 237 - -
Vivi1g06944 686 Gene3D - 340 414 - -
Vivi1g06944 686 Gene3D - 601 686 - -
Vivi1g06944 686 CDD B3_DNA 134 235 IPR003340 GO:0003677
Vivi1g06944 686 MobiDBLite consensus disorder prediction 562 591 - -
Vivi1g06944 686 ProSiteProfiles PB1 domain profile. 605 685 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06944 Vivi-Chr1 165783527 165787202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06944 30 683 B3 DNA Binding Superfamily AT4G30080 55.000 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi1g06944 B3 3.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06944 - - gmx:100796522 971.459