Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06937 ATGCCTCCAAAGCTCGATCCATCCCAGGTCGTCGAAGTCTACGTCCGTGTAACCGGAGGAGAAGTCGGCGCCGCCAGTTCCCTCGCCCCCAAGATCGGTCCTCTCGGTCTCTCCCCAAAGAAGATTGGAGAAGATATTGCCAAGGAAACCGCCAAGGACTGGAAGGGCCTCCGCGTGACAGTGAAACTAACCGTCCAGAATCGTCAAGCGAAGGTTGCGGTGGTTCCATCTGCAGCGGCGCTGGTCATCAAGGCGTTGAAAGAGCCGGAGAGAGACAGGAAGAAAACTAAAAATATAAAGCATAATGGTAATATTTCTCTTGATGATGTGATTGAGATCGCGAAGATTATGAAGCCGAGATCTATGGCCAAGGAGCTTGCGGGGACGGTGAAGGAGATTCTGGGTACTTGTGTTTCAGTGGGGTGTACTGTGGATGGTAAGGATCCGAAGGATTTGCAACAGGAGATTAATGATGGAGATGTTGAGATTCCTCTTGAATGA 501 0.507 MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMKPRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEIPLE 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06937 166 FunFam 60S ribosomal protein L12 1 81 - -
Vivi1g06937 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vivi1g06937 166 Gene3D - 82 164 IPR036769 -
Vivi1g06937 166 FunFam 60S ribosomal protein L12 82 164 - -
Vivi1g06937 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vivi1g06937 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Vivi1g06937 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Vivi1g06937 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 151 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vivi1g06937 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Vivi1g06937 166 Gene3D - 1 81 IPR036796 -
Vivi1g06937 166 MobiDBLite consensus disorder prediction 147 166 - -
Vivi1g06937 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Vivi1g06937 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Vivi1g06937 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06937 Vivi-Chr1 165439352 165440076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06937 1 166 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 90.964 5.07e-109 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06937 K02870 - cit:102627399 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06937 1 165439352 165440076 Vivi1g06937 1 165439352 165440076 ECH
Vivi1g06937 1 165439352 165440076 Vivi5g02392 5 101747417 101748122 ECH