Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06934 ATGCAAATTCCGTTTAAGTTTAACCTTTCTCAATCATCATCATCATCATCACTGTTCTTCGTTCTTCTCTTGTTCTGTTGTCATGGTGCAAATGGGTTTGGTACCATGGGACCAATCTCAGCTTCATTTGGCGAATACGAAGTGTTCTGCTCGATTGATGCTAGTGGAAAACAAGACGTTATCTGTTGGGGGAAAAACACCACTTCACCGCAGCCTATTTCTTCTTCGTCCTATGTTACCAACATTCCTGCCATGTCTGCGCTTTCTGGCGGTGAAGGCTTTCTCTGCGGCATTCTAGCTAACACTTCGCAGGCGTTTTGTTGGGCTGCGACGTCGAAGCAAAACGCAGATCCCGTTTTGGTTCCTGCGGTGTATAAGAACACTGCGTATTCTCGTATAGCGGCTGGGAAGAATCATGTATGTGCTGTTAGAGGATCTTATTACTCGGATCGTGATTCCGGGACTGTGGATTGCTGGCAAATCTTGAAGAGAGGTAAAAACGGTACGTTGACGGCGGTGCTTAATGGTTTGTTCTTTGATCAATCGGTTGTTAATCTGGAAATGAATAGTGTTGTTTCCGGTGAAGGGTTTACCTGTGGTGGGGTTAGAGATGGAGGGTTGGTTTGTTGGGGGCCTAATTCAACAAGCTTGAAGGTTTCCAATGTTACTGATAGTTTTTCTGCTTTAGCTGCGGGGAGGACTGCCTTGTGCGGTGTTTCGAATATCACCGGTGATGTGAGATGCTGGGGCGATATCGAACCTCCGACGACAACCGAGGTTTGTTTCGTTTCGCTATCTGGCGGGGCGCGTCATTTCTGTGGTGTACGAGAGGATAATCATGTGGTTCAATGCTGGGGTAACTTGAGTTCATCTTTGGTTCCAAAAGGTTATGGCTTTATGGCAATTGCTTCTTCGGATTATACTACTTGTGGTATAAGGGAAGATGATCTTCTCCTGGATTGTTGGTTGGTCAACGCTTCGAAGGCTGATTTCGATCCTCCTTTAGAGCTTTCTAGTCCTGGTCTTTGCAGGTCAAGTTCTTGTGGAGTCAATGAGTTTGATTTCAATGTTAGTGTTCTTAGTGAGCCTGATTTGACGAGTTTGTGTGTGAGACAGGGTTTGAGGATTTGTTCGCCTTGTGGGTATAATTGTTCACAAGGGTACTTTTTGTCGAGTCCTTGTACTCGAAATTCTGATAGAGTTTGCACAGCTTGTTCTCTATGTCAGAACAGTTCTTGTTTGAGTGTTTGCAGACTTCATTCTTCCAACGGGTTTTTTCATTGGCATCATATCCGTACATGGGTTCTCATAGTTGGATCTTCTGCTTTGTGTTTGTTGCTGATTTTGGTTTGTGTGTGTTTTTTTCGATGTTGTGCTTGTTCAAGGGGACAACGACATGGGAAACACTCCAAGTCTTGTATCGGTAAACATGAACAAGAAGACAATGATGACGTGATTGGTAATGGTAATGGTAATGGTCATCTTCACTCATTTCCTTCGGCTAGTTCTTGTCCTGGTTTGCCTCAGGTTTTCAGGCTTTCGGAGTTGAAAGACGCTACCAATGGTTTCAAGGAGTTTAATGAGCTTGGAAGAGGAAGTCATGGATTTGTTTACAAAGCAAATTTGGCTGACGGGAGAGTGGTTGCGGTGAAAAGAGCAAACGCTGCTACGATAATACACACCAACAATCGCGACTTTGAAATGGAGTTGGAACTTTTGTGCAAAATTCGTCACTGCAATGTGGTAAACTTGTTGGGTTATTGTGCTGAGATGGGAGAGAGGTTGCTGGTTTATGAGTATATGTCTCATGGAACACTTTCTGATCACATTCATGGTGGTCTTTCTCCTCTAAATTGGAGCTTAAGGCTTAAGATAGCTATGCAATCAGCAAAAGGGGTTGAGTATCTTCACAAGGAGCTATCGCCTCCAATTGTTCATAAGGATCTCAAGAGTTCCAGCATTCTCTTGGATTCAGAATGGGGGGCTAGAGTTTCCGATTTCGGACTTGTTATTTCGAGCGATAAGGATCTTAACGCAGACTTGGAAAGTGATGTTTACAGCTTTGGGATAGTGCTGTTGGAGATTCTAAGTGGAAGGAAGGCTCATGATATAGATTTTGATCCACCTAATGTTGTTGAGTGGGCAGTGCCTTTGTTCAAACAAGGTAAAGCAGCTGCAATAATTGATCGCAGCGTCGCTCTTCCCAGAAATGTCGAGCCTTTGCTTAAGCTTGGCGATATAGCAGAGCTGGCTGTGAGAGAGAATCCGAGTGAGCGTCCATCTATGTCAGATATAGCATCTTGGTTGGAGCAGATTGTGAGGGATGGATTGATCTTATAA 2340 0.441 MQIPFKFNLSQSSSSSSLFFVLLLFCCHGANGFGTMGPISASFGEYEVFCSIDASGKQDVICWGKNTTSPQPISSSSYVTNIPAMSALSGGEGFLCGILANTSQAFCWAATSKQNADPVLVPAVYKNTAYSRIAAGKNHVCAVRGSYYSDRDSGTVDCWQILKRGKNGTLTAVLNGLFFDQSVVNLEMNSVVSGEGFTCGGVRDGGLVCWGPNSTSLKVSNVTDSFSALAAGRTALCGVSNITGDVRCWGDIEPPTTTEVCFVSLSGGARHFCGVREDNHVVQCWGNLSSSLVPKGYGFMAIASSDYTTCGIREDDLLLDCWLVNASKADFDPPLELSSPGLCRSSSCGVNEFDFNVSVLSEPDLTSLCVRQGLRICSPCGYNCSQGYFLSSPCTRNSDRVCTACSLCQNSSCLSVCRLHSSNGFFHWHHIRTWVLIVGSSALCLLLILVCVCFFRCCACSRGQRHGKHSKSCIGKHEQEDNDDVIGNGNGNGHLHSFPSASSCPGLPQVFRLSELKDATNGFKEFNELGRGSHGFVYKANLADGRVVAVKRANAATIIHTNNRDFEMELELLCKIRHCNVVNLLGYCAEMGERLLVYEYMSHGTLSDHIHGGLSPLNWSLRLKIAMQSAKGVEYLHKELSPPIVHKDLKSSSILLDSEWGARVSDFGLVISSDKDLNADLESDVYSFGIVLLEILSGRKAHDIDFDPPNVVEWAVPLFKQGKAAAIIDRSVALPRNVEPLLKLGDIAELAVRENPSERPSMSDIASWLEQIVRDGLIL 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06934 779 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 347 402 IPR001368 GO:0005515
Vivi1g06934 779 SUPERFAMILY Protein kinase-like (PK-like) 498 770 IPR011009 -
Vivi1g06934 779 Gene3D Transferase(Phosphotransferase) domain 1 678 775 - -
Vivi1g06934 779 Pfam Protein tyrosine and serine/threonine kinase 527 674 IPR001245 GO:0004672|GO:0006468
Vivi1g06934 779 Gene3D Phosphorylase Kinase; domain 1 498 600 - -
Vivi1g06934 779 FunFam serine/threonine-protein kinase-like protein CCR1 493 600 - -
Vivi1g06934 779 Gene3D - 74 332 IPR009091 -
Vivi1g06934 779 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 18 773 - -
Vivi1g06934 779 SUPERFAMILY RCC1/BLIP-II 128 323 IPR009091 -
Vivi1g06934 779 ProSiteProfiles Protein kinase domain profile. 523 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g06934 779 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Vivi1g06934 779 FunFam Serine/threonine-protein kinase-like protein CCR1 678 776 - -
Vivi1g06934 779 Gene3D Transferase(Phosphotransferase) domain 1 601 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06934 Vivi-Chr1 165260200 165262790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06934 18 771 Receptor kinase-like Gene Family AT3G59420 32.410 1.16e-108 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vivi1g06934 PK_Tyr_Ser-Thr 4.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06934 - - gmx:100802259 1137.09