Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06929 ATGGGTAACGTAGGAAGTTCTCACAGTCGTCGGAGACACGGTGGCGGTGGGAGTGGCCGGCGTGTTCATCCTCCGGTAACTCCTCCTCCGTTACAAGAAGTTGCGGTTAACCCATACGCTCATCCTGCCGCTGCTCCAGTGTACCAGAATTACCCGAATAACTATCCTCCGCCAGGGAGTGTTCCGATGCCGTTACCGGCGCCGTATGATCATCATCACCGGACGGGGATGGAACCGGTATATGGACGGTATCCGGCGCCACCGCCGGCACCGTATGTGGAGCATCAGAAAGCTGTTACTATTAGGAATGATGTTAATATCAAGAAGGAGACACTGAGGATTGAAGCTGATGAGGAAAATCCTGGGCAGTTTCTTGTTGCGTTTACTTTTGATGCCACTGTTTCTGGGAGCATCGCGGTACTTTTCTTTGCGAAGGAAGGTGACGGATGTGTCCTTACCTCGACGAAGGAAAATGTTCTTGCACCGGTTATTATAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTATACAGCCAGCTGGAACTGGTATCACTTTCTCAATGTTTGAGGAATCTGAGTTATTGAAAGTGGGCGACGTGGACGTCTATCCTGTAGCAGTTAAAGCAGATGCATCTTCCGGTGCCGAGGATGGATCAAACGGAACTCCTAAATCTGGTAGTAAAACAAACACAAACAACTCTCAGATAACTCAAGCCGTATTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAGGTTGTTAAGCAGATATTGTGGGTGAATGGAATGAGGTACGAGCTGCAGGAGATATATGGTATTGGAACTTCAGTCGAAAGTGACATGGATGGGAATGACCCCGGAAAAGAGTGTGTAATCTGCTTGTCAGAACCTCGCGACACAACTGTCCTTCCCTGTCGCCACATGTGCATGTGTAGTGAATGCGCGAAGGTCTTAAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAGCCAGTTGAGAGGCTTTTGGAGATCAGAGTTGGGCCCGAGCCCGAGCCTGAGTCAAAGCCTGAGGCCGAGAAGTAA 1059 0.4929 MGNVGSSHSRRRHGGGGSGRRVHPPVTPPPLQEVAVNPYAHPAAAPVYQNYPNNYPPPGSVPMPLPAPYDHHHRTGMEPVYGRYPAPPPAPYVEHQKAVTIRNDVNIKKETLRIEADEENPGQFLVAFTFDATVSGSIAVLFFAKEGDGCVLTSTKENVLAPVIINFQQGLGQKFIQPAGTGITFSMFEESELLKVGDVDVYPVAVKADASSGAEDGSNGTPKSGSKTNTNNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGTSVESDMDGNDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRFQTNRCPICRQPVERLLEIRVGPEPEPESKPEAEK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06929 352 FunFam probable E3 ubiquitin-protein ligase LOG2 272 337 - -
Vivi1g06929 352 SUPERFAMILY RING/U-box 287 333 - -
Vivi1g06929 352 MobiDBLite consensus disorder prediction 214 233 - -
Vivi1g06929 352 MobiDBLite consensus disorder prediction 1 33 - -
Vivi1g06929 352 MobiDBLite consensus disorder prediction 211 233 - -
Vivi1g06929 352 SMART ring_2 288 326 IPR001841 -
Vivi1g06929 352 Pfam Zinc finger, C3HC4 type (RING finger) 286 332 - -
Vivi1g06929 352 PANTHER MAHOGUNIN 1 338 IPR045194 GO:0061630
Vivi1g06929 352 CDD mRING-HC-C3HC5_MGRN1-like 286 327 IPR045195 -
Vivi1g06929 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 337 IPR013083 -
Vivi1g06929 352 ProSiteProfiles Zinc finger RING-type profile. 288 327 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06929 Vivi-Chr1 164864830 164868132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06929 81 306 C3H Transcription Factor Family AT3G09770 64.655 3.92e-98 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06929 - - gmx:100789032 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06929 1 164864830 164868132 Vivi1g06929 1 164864830 164868132 ECH
Vivi6g04190 6 141336468 141341263 Vivi1g06929 1 164864830 164868132 PCT