Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06927 ATGCAAATCTTCGTGAAAACCCTGACCGGCAAAACCATAACCCTAGAGGTTGAATCCTCCGACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGCATTCCACCAGACCAGCAGCGTCTCATCTTCGCCGGTAAACAATTAGAAGACGGCCGAACCCTAGCCGACTACAACATCCAGAAAGAATCCACACTCCACCTTATTCTCCGTCTCCGCGGCGGCATGCAAATCTTCGTCAAAACCCTAACCGGAAAAACCATCACTCTCGAGGTTGAATCCTCCGACACAATCGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGAATTCCTCCGGATCAGCAGCGATTGATCTTCGCCGGAAAGCAGTTGGAAGACGGGAGAACTCTCACGGATTATAATATCCAGAAAGAGTCTACGCTCCATTTGGTGCTTCGTCTGCGTGGTGGAATGCAGATATTTGTGAAGACGTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGTTCGGATACGATTGATAACGTGAAAGCGAAGATTCAGGATAAGGAAGGGATTCCACCTGATCACATATTTAATAATCAGCAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGACGGACTCTTGCAGATTATAATATTCAAAAGAAATCTACCCTTCATCTTGTTCTCAGGCTCCGTGGTGGTGGTGCTGTATAG 711 0.4698 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLILRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLTDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHIFNNQQRLIFAGKQLEDGRTLADYNIQKKSTLHLVLRLRGGGAV 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06927 236 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vivi1g06927 236 SMART ubq_7 1 72 IPR000626 GO:0005515
Vivi1g06927 236 SMART ubq_7 77 148 IPR000626 GO:0005515
Vivi1g06927 236 SMART ubq_7 153 229 IPR000626 GO:0005515
Vivi1g06927 236 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Vivi1g06927 236 PANTHER UBIQUITIN 1 80 - -
Vivi1g06927 236 SUPERFAMILY Ubiquitin-like 152 234 IPR029071 -
Vivi1g06927 236 FunFam Polyubiquitin 3 153 233 - -
Vivi1g06927 236 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Vivi1g06927 236 Pfam Ubiquitin family 155 231 IPR000626 GO:0005515
Vivi1g06927 236 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vivi1g06927 236 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Vivi1g06927 236 FunFam Polyubiquitin 3 1 76 - -
Vivi1g06927 236 ProSiteProfiles Ubiquitin domain profile. 153 233 IPR000626 GO:0005515
Vivi1g06927 236 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vivi1g06927 236 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vivi1g06927 236 CDD Ubl_ubiquitin 1 76 - -
Vivi1g06927 236 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vivi1g06927 236 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vivi1g06927 236 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vivi1g06927 236 CDD Ubl_ubiquitin 77 152 - -
Vivi1g06927 236 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Vivi1g06927 236 CDD Ubl_ubiquitin 153 233 - -
Vivi1g06927 236 Gene3D - 1 76 - -
Vivi1g06927 236 Gene3D - 153 236 - -
Vivi1g06927 236 Gene3D - 77 152 - -
Vivi1g06927 236 FunFam Polyubiquitin 3 77 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06927 Vivi-Chr1 164751138 164755186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06927 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 3.84e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06927 - K08770 egt:105949960 436.032