Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06925 ATGCAAATGATTCCTAATGACCCTTTTTCACTTTCCACTTCACTTCCTGCCTTTGCTCAAGAACAAAACACAAACCCTAACCCTAAACCTAATACTCCTCCTGTCCCCAAGAAGAAGCGAAATCTTCCCGGAACACCAGATCCAGATGCCGAGGTTATTGCTCTTTCGCCGAAGACACTCATGGCAACAAACAGATTCATCTGTGAGATATGCAACAAAGGTTTTCAAAGAGATCAAAACCTTCAACTTCACAGAAGAGGTCACAACCTTCCATGGAAGCTTAGACAAAGATCAAACAAAGATGTTATCAAGAAGAAAGTTTACATCTGTCCAGAGAAGAGCTGTGTCCACCATGACCCTTCTAGAGCTCTTGGAGACCTCACTGGTATAAAAAAGCACTTCAGTAGAAAGCACGGTGAGAAGAAGTGGAAATGTGAAAAATGTTCCAAGAAATATGCAGTCCAATCTGATTGGAAAGCTCACACAAAAACATGTGGTACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCAAGGAAGGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAAGAGAGTGCGAGGATAACTTCGGTTACGACAACGAATCTGAATTTCAAGAATGAAGAAGGTGCTGGTTCAATGATAGGTTCGCATTCACATTCACATTCGCATTCACATTTACAACATGGTTTATCACATGGAAATGGAATGCTTCAAAATATAGGTGGAGGAATTCCGCATCCACAATTCGGTTCACAAGGATATCATCTAGATTTCAATGGAATTGGAAGCAACATTATGGAGCAACAACAAAGGCCAAGTTTATCACTTTGGTTAAACCAAGGGAATCCACATAATCAGATTCCTGAAATGGGACAAAGTTCAGGACTTTTTGGTTCATCAGGTTTATCTGAGATTGTTCAAATGGGAAATGCTAATATGAATAATAATGCCTTGATTGGTTCTTCATCATCAATGATGTCTAGTTATGGAGTACCTGCTTCAAATTCAACACCTGCAAATCTTTCATTGTCTCCACTTCCAATAGGGAAAAGAGGAGAAACTTCAACGAGTTCAGTTTATAATTCAGATGGTCAAAATAAGCAATTATCAAAGGCTGGTTCTGCTACACCAATGTCAGCTACTGCTCTTCTGCAAAAAGCAGCTCAAATGGGTTCAACTAGAAGCACTTCTAATAATAATATCAACAACAATGGTTCTATTTTTAGTGCTAGTTTTGGTGTTATGACATCACCTTCTTCTTCTAATAGTAGTTTTGATCAGTTTCTGATGCATGGACAAGAAAGTGAACAAGGGAAGATGAATATCTTGCATCATGGTGGTAATTCAAATTCTATGGAACAAGTTCAGCATAGTAATTTGACTAGAGATTTTCTTGGTGTGAGTGGAACAAGTGGTCCTCCTCAGTTTCTACCTCAAGAGCTAGCAAAATTTGCTTCTTCCATTCAATTCACAGGAAACCAGTGA 1506 0.3911 MQMIPNDPFSLSTSLPAFAQEQNTNPNPKPNTPPVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITSVTTTNLNFKNEEGAGSMIGSHSHSHSHSHLQHGLSHGNGMLQNIGGGIPHPQFGSQGYHLDFNGIGSNIMEQQQRPSLSLWLNQGNPHNQIPEMGQSSGLFGSSGLSEIVQMGNANMNNNALIGSSSSMMSSYGVPASNSTPANLSLSPLPIGKRGETSTSSVYNSDGQNKQLSKAGSATPMSATALLQKAAQMGSTRSTSNNNINNNGSIFSASFGVMTSPSSSNSSFDQFLMHGQESEQGKMNILHHGGNSNSMEQVQHSNLTRDFLGVSGTSGPPQFLPQELAKFASSIQFTGNQ 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06925 501 Gene3D Classic Zinc Finger 121 200 - -
Vivi1g06925 501 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vivi1g06925 501 SMART c2h2final6 108 138 IPR013087 -
Vivi1g06925 501 SMART c2h2final6 143 163 IPR013087 -
Vivi1g06925 501 SMART c2h2final6 66 88 IPR013087 -
Vivi1g06925 501 MobiDBLite consensus disorder prediction 1 49 - -
Vivi1g06925 501 FunFam protein indeterminate-domain 12-like 45 114 - -
Vivi1g06925 501 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Vivi1g06925 501 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Vivi1g06925 501 Gene3D Classic Zinc Finger 44 119 - -
Vivi1g06925 501 MobiDBLite consensus disorder prediction 337 383 - -
Vivi1g06925 501 MobiDBLite consensus disorder prediction 1 26 - -
Vivi1g06925 501 MobiDBLite consensus disorder prediction 27 41 - -
Vivi1g06925 501 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 481 IPR031140 -
Vivi1g06925 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Vivi1g06925 501 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06925 Vivi-Chr1 164488627 164491203 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06925 1 492 IDZ Gene Family AT5G03150 45.276 7.30e-134 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g06925 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06925 K25870 - gmx:100801182 550.821