Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06916 ATGGCAACTCAAATTTCCATGGATGATAATAACCAAGGTGGTGCCAATATTAAAAATAGAGTTAATATCTCAATTCAAAAGGGCATGGCATCATCTGAAATAACTGAGGAACTCACAAGTGGACAAAGACCAACTCAAAACCTTAGCATAGAGACACCAAAAACAACTCAACAAGAAGCAAAAGAAGATTTCTTGAGAATCAACATACCTCTAACTCCATCACCAAGAAGAGTGATATTTTCTCCTTGCACAAGTCCGGGTTTCATTCCAAACAGTGATCCCCCTGATCCTTCTAGTTCTACAAACAGACCAACTCTTAAGAAATCTCTTATACCAAAACTCAGTTTCAAATTTAAGAACACAACTTCTGAGATTGAAAAAGCCGCTTTCCTTGCACTCGAAGGTTCCTCCACAGTATCGTCGAAAAAGCCTTTTCTTTCTAGGACACTGTCTCGTATCAAATTGAAAGGGAGGAAAACATCTTCCTTGCCTGCATCGCCGGTTCTTCGTTCAAATCCCGCGTCAGTACATGGCGGGAAAGCTTATCCAGCAATGGCCAGTCCAATTTTACAGGAGAAAGATCCGCGGTTACCAATTCACCGTTCGCGATCTGTTCCTGCATTTACTGGAGAAGATACTTCTGTAGGTGGCAGGTTTCGAATTTTTCGGATGATACCACAATCGAATGAGAAAATTTCCACCGCAACATTTGCAGCATCTCCAACTGGTGAAAATGTTGAAACTGAGGATGGAGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGCGGAGAATTTTAAGTTGGAGTGTAGCTGCAAAGGTGAGCTTTCGCTAGCGCACAAAGAATGCGCGGTTAAATGGTTTGGAATTAAAGGTAATAGGACATGTGATGTATGCAAACAAGAAGTTCAGAACTTGCCTGTCACTCTTTTAAGACTTCATAGCGCGAACTTGCAATCGAACAGAGGTCACTTAGACGAATCTTCTCATTACAGGGTTTGGCAGGATGCTCCGATTCTTGTCATTGTCCACATGCTGGCCTACTTCTGTTTTCTTGAGCAGCTTCTTGTTTCGAGTATGGGATCTGGTGCTATTGCCATGTCGCTTCCATTTTCTTGTATACTCGGCCTTCTTGCAAGCATGACAGCTACAACCATGGTAAGGAGAAATCAAGTTTGGATTTATGGAACCATCCAGTTTTGTTTGGTTGTTCTTGCTGGACATCTTCTTTACTCAGTGGCTCATATGGAAGCTGTTTTGGCGATCCTACTGGCTACATTTGCTGGGTTTGGAACTGTAATGTGTGGAACATCTCTTCTTATGGAGATATTGAAATGGAGGAGAAGATGGCTTGCTCAGTGGAATCAACAGACTGGCAATTCATCGAACGCGGTTCCGCCTGATCAATCATCTGCTACCACTCATCCAGCTCAAAGTGATTCTCAACATACTGAGAGTAATGTGGGAACTTCTCCTAGGCAAATGAGCTGA 1521 0.4241 MATQISMDDNNQGGANIKNRVNISIQKGMASSEITEELTSGQRPTQNLSIETPKTTQQEAKEDFLRINIPLTPSPRRVIFSPCTSPGFIPNSDPPDPSSSTNRPTLKKSLIPKLSFKFKNTTSEIEKAAFLALEGSSTVSSKKPFLSRTLSRIKLKGRKTSSLPASPVLRSNPASVHGGKAYPAMASPILQEKDPRLPIHRSRSVPAFTGEDTSVGGRFRIFRMIPQSNEKISTATFAASPTGENVETEDGGEDIPEEEAVCRICMVELGEGAENFKLECSCKGELSLAHKECAVKWFGIKGNRTCDVCKQEVQNLPVTLLRLHSANLQSNRGHLDESSHYRVWQDAPILVIVHMLAYFCFLEQLLVSSMGSGAIAMSLPFSCILGLLASMTATTMVRRNQVWIYGTIQFCLVVLAGHLLYSVAHMEAVLAILLATFAGFGTVMCGTSLLMEILKWRRRWLAQWNQQTGNSSNAVPPDQSSATTHPAQSDSQHTESNVGTSPRQMS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06916 506 MobiDBLite consensus disorder prediction 32 55 - -
Vivi1g06916 506 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Vivi1g06916 506 SUPERFAMILY RING/U-box 258 313 - -
Vivi1g06916 506 SMART ringv_2 261 310 IPR011016 GO:0008270
Vivi1g06916 506 MobiDBLite consensus disorder prediction 32 56 - -
Vivi1g06916 506 MobiDBLite consensus disorder prediction 468 506 - -
Vivi1g06916 506 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Vivi1g06916 506 CDD RING_CH-C4HC3_MARCH 262 310 - -
Vivi1g06916 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 317 IPR013083 -
Vivi1g06916 506 MobiDBLite consensus disorder prediction 80 106 - -
Vivi1g06916 506 PANTHER OS02G0165000 PROTEIN 29 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06916 Vivi-Chr1 164384300 164387950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06916 256 316 C3H Transcription Factor Family AT2G37950 43.750 7.89e-11 60.1