Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06915 ATGGCAACTCAAATTTCCATGGATGATAATAACCAAGGTGGTGCCAATATTAAAAATAGAGTTAATATCTCAATTCAAAAGGGCATGGCATCATCTGAAATAACTGAGGAACTCACAAGTGGACAAAGACCAACTCAAAACCTTAGCATAGAGACACCAAAAACAACTCAACAAGAAGCAAAAGAAGATTTCTTGAGAATCAACATACCTCTAACTCCATCACCAAGAAGAGTGATATTTTCTCCTTGCACAAGTCCGGGTTTCATTCCAAACAGTGATCCCCCTGATCCTTCTAGTTCTACAAACAGACCAACTCTTAAGAAATCTCTTATACCAAAACTCAGTTTCAAATTTAAGAACACAACTTCTGAGATTGAAAAAGCCGCTTTCCTTGCACTCGAAGGTTCCTCCACAGTATCGTCGAAAAAGCCTTTTCTTTCTAGGACACTGTCTCGTATCAAATTGAAAGGGAGGAAAACATCTTCCTTGCCTGCATCGCCGGTTCTTCGTTCAAATCCCGCGTCAGTACATGGCGGGAAAGCTTATCCAGCAATGGCCAGTGAGAAAGATCCGCGGTTACCAATTCACCGTTCGCGATCTGTTCCTGCATTTACTGGAGAAGATACTTCTGTAGGTGGCAGGTTTCGAATTTTTCGGATGATACCACAATCGAATGAGAAAATTTCCACCGCAACATTTGCAGCATCTCCAACTGGTGAAAATGTTGAAACTGAGGATGGAGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGCGGAGAATTTTAAGTTGGAGTGTAGCTGCAAAGGTGAGCTTTCGCTAGCGCACAAAGAATGCGCGGTTAAATGGTTTGGAATTAAAGGTAATAGGACATGTGATGTATGCAAACAAGAAGTTCAGAACTTGCCTGTCACTCTTTTAAGACTTCATAGCGCGAACTTGCAATCGAACAGAGGTCACTTAGACGAATCTTCTCATTACAGGGTTTGGCAGGATGCTCCGATTCTTGTCATTGTCCACATGCTGGCCTACTTCTGTTTTCTTGAGCAGCTTCTTGTTTCGAGTATGGGATCTGGTGCTATTGCCATGTCGCTTCCATTTTCTTGTATACTCGGCCTTCTTGCAAGCATGACAGCTACAACCATGGTAAGGAGAAATCAAGTTTGGATTTATGGAACCATCCAGTTTTGTTTGGTTGTTCTTGCTGGACATCTTCTTTACTCAGTGGCTCATATGGAAGCTGTTTTGGCGATCCTACTGGCTACATTTGCTGGGTTTGGAACTGTAATGTGTGGAACATCTCTTCTTATGGAGATATTGAAATGGAGGAGAAGATGGCTTGCTCAGTGGAATCAACAGACTGGCAATTCATCGAACGCGGTTCCGCCTGATCAATCATCTGCTACCACTCATCCAGCTCAAAGTGATTCTCAACATACTGAGAGTAATGTGGGAACTTCTCCTAGGCAAATGAGCTGA 1509 0.4248 MATQISMDDNNQGGANIKNRVNISIQKGMASSEITEELTSGQRPTQNLSIETPKTTQQEAKEDFLRINIPLTPSPRRVIFSPCTSPGFIPNSDPPDPSSSTNRPTLKKSLIPKLSFKFKNTTSEIEKAAFLALEGSSTVSSKKPFLSRTLSRIKLKGRKTSSLPASPVLRSNPASVHGGKAYPAMASEKDPRLPIHRSRSVPAFTGEDTSVGGRFRIFRMIPQSNEKISTATFAASPTGENVETEDGGEDIPEEEAVCRICMVELGEGAENFKLECSCKGELSLAHKECAVKWFGIKGNRTCDVCKQEVQNLPVTLLRLHSANLQSNRGHLDESSHYRVWQDAPILVIVHMLAYFCFLEQLLVSSMGSGAIAMSLPFSCILGLLASMTATTMVRRNQVWIYGTIQFCLVVLAGHLLYSVAHMEAVLAILLATFAGFGTVMCGTSLLMEILKWRRRWLAQWNQQTGNSSNAVPPDQSSATTHPAQSDSQHTESNVGTSPRQMS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06915 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 313 IPR013083 -
Vivi1g06915 502 MobiDBLite consensus disorder prediction 32 55 - -
Vivi1g06915 502 SUPERFAMILY RING/U-box 254 309 - -
Vivi1g06915 502 Pfam RING-variant domain 258 305 IPR011016 GO:0008270
Vivi1g06915 502 PANTHER OS02G0165000 PROTEIN 29 469 - -
Vivi1g06915 502 MobiDBLite consensus disorder prediction 32 56 - -
Vivi1g06915 502 MobiDBLite consensus disorder prediction 464 502 - -
Vivi1g06915 502 CDD RING_CH-C4HC3_MARCH 258 306 - -
Vivi1g06915 502 ProSiteProfiles Zinc finger RING-CH-type profile. 250 312 IPR011016 GO:0008270
Vivi1g06915 502 MobiDBLite consensus disorder prediction 80 106 - -
Vivi1g06915 502 SMART ringv_2 257 306 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06915 Vivi-Chr1 164384298 164387952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06915 252 312 C3H Transcription Factor Family AT2G37950 43.750 7.59e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06915 - - tpra:123922782 758.059