Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06913 ATGAGCGTCATCGACCTTCTAACCCGAGTCGATTCCATTTGTAAAAAGTACGACAAATACGACCTCGACAAGAACAAGGATGCCAATGTCACCGGCGACGATGCTTTCGTCAGACTCTACGCCTCCGTTGACTCCGACATTGAAAACCTACTTCAGAAAGCAGAAACCGCTTCCAAGGAGAAAGGGAAGGCATCCGCTGTAGCGATCAATGCGGAGATTCGTCGTACCAAGTCTCGGTTGTTGGAGGAAGTTCCCAAGTTGCAGAGGTTGGCTGTCAAAAAGGTAAAAGGGCTTTCGTCGCAAGAGTTTGCTGCCCGTAATGATCTGGTTCTTGCGTTGCCGGAAAGAATCCAGGCTATCCCAGATGGAACTCCTGTTGCGCCGAAACAAACTGGTGGCTGGGCAGCTTCTTCTGCCTCACGCGCTGAAATTAAATTTGATTCGGATGGCCGATTTGATGATGAATACTTCAAATCAACTGAGCAATCAAGTCAATTCAGACAGGAATATGAAATGCGTAGAATAAAACAGGATCAAGGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAGACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCCTTGATGGATGAGATCGACACCAAGGTGGACAGGGCATCATCTGATCTTAAGAATACTAATGTTAGGCTTAAAGACACGGTGAATCAGCTTCGATCGAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTCTGGGAATTGCTGCCTACTTATACAATGTGCTTAAATGA 798 0.4449 MSVIDLLTRVDSICKKYDKYDLDKNKDANVTGDDAFVRLYASVDSDIENLLQKAETASKEKGKASAVAINAEIRRTKSRLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPVAPKQTGGWAASSASRAEIKFDSDGRFDDEYFKSTEQSSQFRQEYEMRRIKQDQGLDMIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDRASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06913 265 CDD SNARE_Qc 176 231 - -
Vivi1g06913 265 ProSitePatterns Syntaxin / epimorphin family signature. 177 216 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vivi1g06913 265 FunFam Putative syntaxin-71-like 171 232 - -
Vivi1g06913 265 SUPERFAMILY SNARE fusion complex 164 231 - -
Vivi1g06913 265 PANTHER SYNTAXIN 44 253 IPR045242 -
Vivi1g06913 265 Gene3D - 171 232 - -
Vivi1g06913 265 SMART tSNARE_6 166 233 IPR000727 -
Vivi1g06913 265 Pfam SNARE domain 208 257 IPR000727 -
Vivi1g06913 265 Coils Coil 40 60 - -
Vivi1g06913 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06913 Vivi-Chr1 164230073 164235002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06913 1 265 SNARE and Associated Proteins AT3G09740 77.068 6.32e-155 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06913 K08506 - gmx:100819272 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06913 1 164230073 164235002 Vivi1g06913 1 164230073 164235002 ECH