Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06911 ATGCAAATCTTTGTGAAAACCCTGACCGGCAAAACCATAACCCTAGAGGTTGAATCCTCCGACACCATCGACAACGTCAAAGCCAAAATCCAAGACATGGAAGGCATTCCGCCAGACCAGAAGCGTCTCATCTTCGCCGATAAACAACTAGAAGACGGCCGAACCCTCGCCGACTACAACATCCAGAAAGAATCCACACTCCACCTCGTTCTCCGTCTCCGCGGCGGCATGCAAATCTTCGTCAAAACCCTAACCGCCAAAACCATCACACTCGAGGTTGAATCCTCTGACACAATCGACAACGTGAAGACGAAGATCCAGGATAAGAAAGGAATTCCTCCAGATCAGCAGCGATTGATCTTTGTAGGGAAGCAACTGGAGGACGGGAGAACTCTTGCGGATTATAATATCCAGAAAGAGTCTACTCTGCATTTGGTTCTTCGTCTGCGTGGTGGAATGCAGATATTTGTGAAGACATTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGTTCGGATACAATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAAGGGATTCCACTTGATCAACAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGGACTCTTGCTGATTATAATATTCAGAAGGAGTCTACACTTCACCTTGTTCTTAGGCTCCGTGGTGGTTGTGATGTATTGTCAGTTAGGAGGCCTGTCCAGTTGTATATGTCTCTGGTGAAGAAGTTTGCTCTCACTCCCTGCGTCGCCGATAATTTTCGCGCTCTAGCGGAGATCAAAGAACAACCTGTGCTGATTAGTGAGCCTGGTGTTGGGAAGACTGAAATTTCTGAAGGGCTCATCTTCGCCGGTAAACAATTAGAAGACGGCCGAACCCTCGCCGACTACAACATCCAGAAAGAATCCACACTCCACCTCGTTCTCCGTTTCCGCGGCGGCATGCAAATCTTCGTCAAAACCCTAACCGGAAAAACCATCACTCTCGAGGTTGAATCCTCCGACACAATCGACAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATTCCTCCGGATCAACAGCGACTGATCTTCGCCGGAAAGCAGTTGGAAGACGGGAGAACTCTGGCGGATTATAACATCCAGAAAGAGTCTACGCTCCATTTGGTGCTTCGTCTGCGTGGTGGAATGCAGATATTTGTGAAGACGTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGTTCTGATACGATTGATAATGTGAAAGCGAAGATTCAGGATAAGGAAGGGATTCCACCTGATCAGCAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGGACGGACTCTTGCTGA 1359 0.4761 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDMEGIPPDQKRLIFADKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTAKTITLEVESSDTIDNVKTKIQDKKGIPPDQQRLIFVGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPLDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGCDVLSVRRPVQLYMSLVKKFALTPCVADNFRALAEIKEQPVLISEPGVGKTEISEGLIFAGKQLEDGRTLADYNIQKESTLHLVLRFRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTDSC 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06911 452 SUPERFAMILY Ubiquitin-like 317 394 IPR029071 -
Vivi1g06911 452 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Vivi1g06911 452 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Vivi1g06911 452 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vivi1g06911 452 Pfam Ubiquitin family 285 316 IPR000626 GO:0005515
Vivi1g06911 452 Pfam Ubiquitin family 397 449 IPR000626 GO:0005515
Vivi1g06911 452 Pfam Ubiquitin family 321 392 IPR000626 GO:0005515
Vivi1g06911 452 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Vivi1g06911 452 ProSitePatterns Ubiquitin domain signature. 421 446 IPR019954 -
Vivi1g06911 452 Gene3D - 1 76 - -
Vivi1g06911 452 Gene3D - 153 235 - -
Vivi1g06911 452 Gene3D - 319 394 - -
Vivi1g06911 452 Gene3D - 77 152 - -
Vivi1g06911 452 Gene3D - 282 318 - -
Vivi1g06911 452 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Vivi1g06911 452 ProSiteProfiles Ubiquitin domain profile. 395 449 IPR000626 GO:0005515
Vivi1g06911 452 PANTHER UBIQUITIN 284 320 - -
Vivi1g06911 452 SUPERFAMILY Ubiquitin-like 394 449 IPR029071 -
Vivi1g06911 452 SMART ubq_7 236 314 IPR000626 GO:0005515
Vivi1g06911 452 SMART ubq_7 153 224 IPR000626 GO:0005515
Vivi1g06911 452 SMART ubq_7 319 390 IPR000626 GO:0005515
Vivi1g06911 452 SMART ubq_7 1 72 IPR000626 GO:0005515
Vivi1g06911 452 SMART ubq_7 395 451 IPR000626 GO:0005515
Vivi1g06911 452 SMART ubq_7 77 148 IPR000626 GO:0005515
Vivi1g06911 452 CDD Ubl_ubiquitin 319 394 - -
Vivi1g06911 452 CDD Ubl_ubiquitin 1 76 - -
Vivi1g06911 452 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Vivi1g06911 452 FunFam Polyubiquitin 3 153 228 - -
Vivi1g06911 452 CDD Ubl_ubiquitin 153 228 - -
Vivi1g06911 452 FunFam Ubiquitin-60S ribosomal L40 fusion 1 77 - -
Vivi1g06911 452 PRINTS Ubiquitin signature 350 370 IPR019956 -
Vivi1g06911 452 PRINTS Ubiquitin signature 371 392 IPR019956 -
Vivi1g06911 452 PRINTS Ubiquitin signature 329 349 IPR019956 -
Vivi1g06911 452 ProSiteProfiles Ubiquitin domain profile. 319 394 IPR000626 GO:0005515
Vivi1g06911 452 FunFam Polyubiquitin 3 319 394 - -
Vivi1g06911 452 FunFam Polyubiquitin 3 78 152 - -
Vivi1g06911 452 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vivi1g06911 452 FunFam Polyubiquitin-C 395 452 - -
Vivi1g06911 452 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Vivi1g06911 452 ProSiteProfiles Ubiquitin domain profile. 285 318 IPR000626 GO:0005515
Vivi1g06911 452 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vivi1g06911 452 CDD Ubl_ubiquitin 77 152 - -
Vivi1g06911 452 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Vivi1g06911 452 Gene3D - 395 445 - -
Vivi1g06911 452 SUPERFAMILY Ubiquitin-like 285 318 IPR029071 -
Vivi1g06911 452 SUPERFAMILY Ubiquitin-like 152 229 IPR029071 -
Vivi1g06911 452 ProSitePatterns Ubiquitin domain signature. 345 370 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06911 Vivi-Chr1 164162025 164166948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06911 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 94.805 4.05e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06911 K08770 - jcu:105633027 734.561