LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g06909	ATGCAAATCTTCGTGAAAACCTTGACCGGCAAAACCATCACTCTCGAGGTTGAATCCTCTGACACAATCGACAACGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAGCAGCGATTGATTTTTGCCGGAAAGCAGTTGGAAGACGGGAGAACTCTTGCGAATTATAATATCCAGAAAGAGTCTACTCTGCATTTGGTTCTTCGTCTCCATGGTGGAATGCAGATATTTGTGAAGACGTTGACAGGGAAGACGATTACTTTGGAGGTGGAGAATTCAGATACAGTTGATAATGTGAAAGCGAAGATTCAGGATAAGGAAGGGATTCCACCTGATCAACAACGTCTTATCTTTGCTGGTAAACAACTTGAAGAAGGACGGACTCTTGCTGATTATAATATTCAGAAGGAGTCTACCCTTCATCTTGTTCTCAGGCTCCGTGGTGGCAGTGATGTATAG	468	0.4316	MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLANYNIQKESTLHLVLRLHGGMQIFVKTLTGKTITLEVENSDTVDNVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGSDV	155

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g06909	155	ProSitePatterns	Ubiquitin domain signature.	27	52	IPR019954	-
	Vivi1g06909	155	PANTHER	UBIQUITIN	1	80	-	-
	Vivi1g06909	155	Gene3D	-	77	155	-	-
	Vivi1g06909	155	Gene3D	-	1	76	-	-
	Vivi1g06909	155	ProSiteProfiles	Ubiquitin domain profile.	77	152	IPR000626	GO:0005515
	Vivi1g06909	155	ProSiteProfiles	Ubiquitin domain profile.	1	76	IPR000626	GO:0005515
	Vivi1g06909	155	FunFam	Polyubiquitin 3	77	152	-	-
	Vivi1g06909	155	ProSitePatterns	Ubiquitin domain signature.	103	128	IPR019954	-
	Vivi1g06909	155	SUPERFAMILY	Ubiquitin-like	76	152	IPR029071	-
	Vivi1g06909	155	CDD	Ubl_ubiquitin	1	76	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g06909	Vivi-Chr1	164141672	164142231	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g06909	1	77	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	96.104	4.80e-49	152

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g06909	K08770		-	psom:113344796	292.352

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