Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06909 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAAACCATCACTCTCGAGGTTGAATCCTCTGACACAATCGACAACGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAGCAGCGATTGATTTTTGCCGGAAAGCAGTTGGAAGACGGGAGAACTCTTGCGAATTATAATATCCAGAAAGAGTCTACTCTGCATTTGGTTCTTCGTCTCCATGGTGGAATGCAGATATTTGTGAAGACGTTGACAGGGAAGACGATTACTTTGGAGGTGGAGAATTCAGATACAGTTGATAATGTGAAAGCGAAGATTCAGGATAAGGAAGGGATTCCACCTGATCAACAACGTCTTATCTTTGCTGGTAAACAACTTGAAGAAGGACGGACTCTTGCTGATTATAATATTCAGAAGGAGTCTACCCTTCATCTTGTTCTCAGGCTCCGTGGTGGCAGTGATGTATAG 468 0.4316 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLANYNIQKESTLHLVLRLHGGMQIFVKTLTGKTITLEVENSDTVDNVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGSDV 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06909 155 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vivi1g06909 155 PANTHER UBIQUITIN 1 80 - -
Vivi1g06909 155 Gene3D - 77 155 - -
Vivi1g06909 155 Gene3D - 1 76 - -
Vivi1g06909 155 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Vivi1g06909 155 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vivi1g06909 155 FunFam Polyubiquitin 3 77 152 - -
Vivi1g06909 155 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Vivi1g06909 155 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Vivi1g06909 155 CDD Ubl_ubiquitin 1 76 - -
Vivi1g06909 155 FunFam Polyubiquitin 3 1 76 - -
Vivi1g06909 155 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Vivi1g06909 155 Pfam Ubiquitin family 3 73 IPR000626 GO:0005515
Vivi1g06909 155 CDD Ubl_ubiquitin 77 152 - -
Vivi1g06909 155 SMART ubq_7 1 72 IPR000626 GO:0005515
Vivi1g06909 155 SMART ubq_7 77 148 IPR000626 GO:0005515
Vivi1g06909 155 PRINTS Ubiquitin signature 129 150 IPR019956 -
Vivi1g06909 155 PRINTS Ubiquitin signature 87 107 IPR019956 -
Vivi1g06909 155 PRINTS Ubiquitin signature 108 128 IPR019956 -
Vivi1g06909 155 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06909 Vivi-Chr1 164141672 164142231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06909 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 96.104 4.80e-49 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06909 K08770 - psom:113344796 292.352