Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06899 ATGGGGAAGAAGCCAAATTGGTTTTCCAATGTGAAGAAAGCTCTTAGTCCTGACTCTAAGGAAAACAAACACCAGAATTCAAGTGGATCAAAGAAGAAATGGTTTGGGAAGAAAAAGTTACACACTTCAGACTCTTATCCAGAAACTGATCCAGCACCTCCTTTTGCTCCACCTGAGGAGGAGAATATTTTAACTCAGGTTGAGAATGAAAACAATCATGATCATGTTGAAGATGTAAGAGATGTGGAGGCTGATGTACCTGCTCATGATGTTGTGACAGAGACTTCTGAGGTTCAAGTTCAAGTCACTCCAGTTGTTCGGAATGTCGGTAAACCAAATGTCGAAGTCGCGGCGACCAAGATTCAAACCACTTTTCGGGGATACATGGCAAGAAGAGCATTGCGGGCTTTAAGGGGACTGTTCAGGTTGAGATCCCTGATGGAAGGGCCGGTGGTAAAACGTCAAGCCATTAGTACCCTCCGCTCTATGCAGACTTTAGCTCATGTACAATCCGAGATTCGTTCGAGGCGGATCAGGATGTTAGAGGAGACCCAAGCTTTGCAAAAACAGCTCTTACAGAAGCACACAAAAGAGCTAGAGATCTTACAGATTGGGGAGGAATGGGATGAAAGCGTGCAATCAAGAGAACAAGTTGAAGCCAAATTACTAAGCAGATACGAAGCTACTATAAGAAGAGAAAGAGCAATGGCTTATTCATTCACTCATCAGAAAAATGGGAGAAATTCATCGAAATCTATAAATCCAATGTTCATGGATCCAACCAATCCTGCTTGGGGATGGAGCTGGTTGGAGCGTTGGATGGCAGCCAACCAAAGTCCTATAGAAAAAGAGAAGAACAACAATCCATCTGTAAAAAGTTCAGGTCGCAGCATTACCAGTTCCGAAATAAGCAAATCATTTGCCCGTTTCCAGCTCAATACCGAAACTCATTCTCCAACAGCCAGCCAAACTCCGGGTTCGCCTAACTTCCATTCCAACTCAAAGCCTCCCAAGCCAGCAGTTGGTAAGAAACTAAACAAGGCAAGCCCGAAGGAGAGTGTTATTCTCGACGATGACACCAAAAGCACAATGAGTATGCAGTCGAAGCGAGTCCAAAGGAGGCACTCCATTGCTGGACCAATAGTGAGGGATGATGAAAGCCTTGCAAGCTCTCCATCAGTTCCAAGTTACATGGTTTCAACTAAATCTGCAAAAGCTAAATCCAGGTTGCAAAGTCCATTAGCTGCAGAGAATGGAACACCAGATAAAGGGTCCCTTGGAAATGCGAAGAAGCGGCTTACTTTCCCGGCTTCGCCTGCCAGACCAAGGCGGCATTCAGGTCCACCAAAGGTAGATAGCAGCTTAAATGCAGAAATTACTGTTGGCAATGGTGTGGCTGGTTGA 1404 0.4501 MGKKPNWFSNVKKALSPDSKENKHQNSSGSKKKWFGKKKLHTSDSYPETDPAPPFAPPEEENILTQVENENNHDHVEDVRDVEADVPAHDVVTETSEVQVQVTPVVRNVGKPNVEVAATKIQTTFRGYMARRALRALRGLFRLRSLMEGPVVKRQAISTLRSMQTLAHVQSEIRSRRIRMLEETQALQKQLLQKHTKELEILQIGEEWDESVQSREQVEAKLLSRYEATIRRERAMAYSFTHQKNGRNSSKSINPMFMDPTNPAWGWSWLERWMAANQSPIEKEKNNNPSVKSSGRSITSSEISKSFARFQLNTETHSPTASQTPGSPNFHSNSKPPKPAVGKKLNKASPKESVILDDDTKSTMSMQSKRVQRRHSIAGPIVRDDESLASSPSVPSYMVSTKSAKAKSRLQSPLAAENGTPDKGSLGNAKKRLTFPASPARPRRHSGPPKVDSSLNAEITVGNGVAG 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06899 467 MobiDBLite consensus disorder prediction 315 334 - -
Vivi1g06899 467 MobiDBLite consensus disorder prediction 389 408 - -
Vivi1g06899 467 SMART iq_5 113 135 IPR000048 GO:0005515
Vivi1g06899 467 MobiDBLite consensus disorder prediction 1 59 - -
Vivi1g06899 467 MobiDBLite consensus disorder prediction 280 299 - -
Vivi1g06899 467 PANTHER IQ-DOMAIN 5-RELATED 1 450 - -
Vivi1g06899 467 MobiDBLite consensus disorder prediction 279 299 - -
Vivi1g06899 467 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Vivi1g06899 467 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Vivi1g06899 467 MobiDBLite consensus disorder prediction 315 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06899 Vivi-Chr1 163792658 163795438 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06899 1 466 IQD Protein Family AT5G03040 52.174 7.69e-137 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06899 - - gmx:100801847 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06899 1 163792658 163795438 Vivi1g06899 1 163792658 163795438 ECH
Vivi6g04218 6 141732867 141736318 Vivi1g06899 1 163792658 163795438 PCT