Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06880 ATGGCTAATGAAAGATTATCTTCTTCTTCTTTTTTCACCTACGATGTATTCTTCAGCTTCAATCCCTCAGATACTACCAATGGTTTCACTGCAAATCTCTCCCAAGCTTTCCAAAGAAGGGGAATTAAGAGTTTTATGGAAACCAGAGACGAAATCACACCGGACATTTTCAATTTAATTGTAAAATCCAAATCTGCGGTTATCCTACTCTCTGAGAACTATGCTTCATCTTCACGTTGTTTGGAAGAACTTGCATATATCCTTAATAACTTTGACCATGCTACAAGGTCTGTTTGTCCGATTTTCTATGATGTGAAGTACTATGAAGTGAGAGGGTTTAGCGGAGCTTATGGTGAAGCGTTGGCGAGACACGAGAAGAATTTGAAAGATAACAAGGGGAAATTGCTGAAATGGAAGAACGCGCTATTTGAAGTAACTAATTTGCCTCGCTTTCATTTCCAACACGGGGTTGGATATGATGAAACTGCTTTTATTATGAAGATTGTCAAAGAGGTCTCTAGAAAGCATTATTATGCTCCTTTGCCCAATGAAGATCACCTAGTCGGATTAGAGGATCCTTTGGAAGAAGTGTGCTCCCTTATGGATTTGGAATCTGATAGTGTGCTCAAGATAGGGATATTTGGAATGAGTGGTGTTGGTAAAACAACACTGGCTGGAGCAGTTTATAATAGAATTGCACACCAATTCGAAGGTCATTGTTTTCTTTATGTCAAAGGAAATGCTGAGATCGTGCACCTCCAAAATAAGCTTCTTTTCGATATAGTTGGAGAAGATATTCAGATAGAAAGTGCCCATAGAGGTGCTTCATTAATAAAGGAATGGCTCCAACAGAAGAAAGTTCTTTTGATACTTGATGATGTGGATAGACTAGAGCAACTGGAGGCCTTGGTTGGAGGACAGGATTGGTTTGGTTCTGGAAGCAGAGTTATCATTACAACTAGGAACAGACATTTGCTAGCATATCAGGGTGTTGAAATAACATACAATGTAAAGAAGTTAAATGACAAATATGCATATGACTTGTTTATTCTCAAAGCTTTTGGAAAGAGAAAAGTCGAGCCAATATACGCAGAACTTTCGTACCAAATAGTAGCTTATGCTGAAGGGCTTCCATTGACCTTGAAAATGTTAGGTTCCTTTTTGCATGGTAGAAGTGTAGATGAATGGAGAACTGCATTAGCGAGGCTAAACAGTACTCCGGATAAAAAAAATGATATCCAAAAAGTACTTAGAATAAGTTTTGATAATTTAGGGGATGATGAGAAAAGTGTTTTTCTTGACATTGCTTGTTGTTTCAAGGGATATGAATTGACAGAGGTCAACAAGATACTATGTGCTCATTATGGCTACAACGTGAAATATCATGTTGATGTGTTAATTGGTAAATCTCTCATAACTATTAGTAGTTTGGATGGTAAGGTGAAAGTGCATGAGTTGATAGAGAACATGGCTAAAGAAATTGTCCGTCGTGAATCACCAGATCCCGGGAAACATAGTAGGCTATGGTCTCATGATGATATACTTGACATTTTAAAAACAAATAAGGGTACTGATAAAATCCAAATCATACATTTGGATCCTCCCTTAATTGGAGATGAAGTAATAAAATGGGATGCCGAGGCATTCAAGAAGATGGAAAATCTCAAAACACTTATCATTAGAAAATGTCACTTTTCCAATGCTCCCAAACATTTTCCATCTAGTTTAAGAGTATTGCAATGGTGGAATTATCCTTCACAAGAGTTACCATGCGATTTTGATCCAAAACAACTTGTCATATGCATGGTACCAGGCCTGAGTGTCACACCACCCCAGCCGTTTGAGTTATTCGAGACTTGTAAGAGGGCTGCCCGAGTTATGTTGCAGGTTTCTGTGAGGGTTTTGCAAGCTGAGGCGACTTGGAGACTAGTTGGCCTTGTGTCAAGTGTAGTTGGCCTGTTATGTTATGCTTTGAGCCCTTCTTTCAACCGATTAATTGGTGGCTGGAACTCTTTCAAGGGTGTTCTTTACGCCGTGTTTTCTTTGGTTATCATTACCACTATATTATTTGGAAAGGAGTCTTCTCTTTCTACACAGTATGTTCAGTACAAAGCCTACATGAAATTTGCAGTTTTAATGATCATCTCATTGTACTCATTCTTTTATGACAATGCTGTGAGCGGGAAACCTGAAATACGGAGTGTGGTTTCGAATGCTGCGTTTGCTTTGATGTCATTAAGCTTGTCAAAACTGGTTAAGTTTGGATTTGAGATTGGTATGTTCTCTTATTTCCTAGGCTGTCTTGTGATTCAATTATGGACCATCGATAGGAAGCTGATTTTGGTAGCCATAATCTTCGGTTGTCCACTCTTTGTTATGCAATCCTCTCTGGATTTTGAACCAGAAGTCAGTAATGGAAGTCAAGTTATTAATTCAAATTCACAAACAATGTTATTGCTAACTAATAGAGGTCAAGATATTCATTTAGATATTGACTCCTCTTCAGATGCCACACCAGAGGTTAATAGTGGTGGTGAACATGTCATCAACGTTCCTTAG 2559 0.3837 MANERLSSSSFFTYDVFFSFNPSDTTNGFTANLSQAFQRRGIKSFMETRDEITPDIFNLIVKSKSAVILLSENYASSSRCLEELAYILNNFDHATRSVCPIFYDVKYYEVRGFSGAYGEALARHEKNLKDNKGKLLKWKNALFEVTNLPRFHFQHGVGYDETAFIMKIVKEVSRKHYYAPLPNEDHLVGLEDPLEEVCSLMDLESDSVLKIGIFGMSGVGKTTLAGAVYNRIAHQFEGHCFLYVKGNAEIVHLQNKLLFDIVGEDIQIESAHRGASLIKEWLQQKKVLLILDDVDRLEQLEALVGGQDWFGSGSRVIITTRNRHLLAYQGVEITYNVKKLNDKYAYDLFILKAFGKRKVEPIYAELSYQIVAYAEGLPLTLKMLGSFLHGRSVDEWRTALARLNSTPDKKNDIQKVLRISFDNLGDDEKSVFLDIACCFKGYELTEVNKILCAHYGYNVKYHVDVLIGKSLITISSLDGKVKVHELIENMAKEIVRRESPDPGKHSRLWSHDDILDILKTNKGTDKIQIIHLDPPLIGDEVIKWDAEAFKKMENLKTLIIRKCHFSNAPKHFPSSLRVLQWWNYPSQELPCDFDPKQLVICMVPGLSVTPPQPFELFETCKRAARVMLQVSVRVLQAEATWRLVGLVSSVVGLLCYALSPSFNRLIGGWNSFKGVLYAVFSLVIITTILFGKESSLSTQYVQYKAYMKFAVLMIISLYSFFYDNAVSGKPEIRSVVSNAAFALMSLSLSKLVKFGFEIGMFSYFLGCLVIQLWTIDRKLILVAIIFGCPLFVMQSSLDFEPEVSNGSQVINSNSQTMLLLTNRGQDIHLDIDSSSDATPEVNSGGEHVINVP 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06880 852 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 149 IPR035897 -
Vivi1g06880 852 SMART AAA_5 207 341 IPR003593 GO:0016887
Vivi1g06880 852 Pfam NB-ARC domain 194 423 IPR002182 GO:0043531
Vivi1g06880 852 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 605 IPR044974 GO:0006952
Vivi1g06880 852 SMART till_3 13 148 IPR000157 GO:0007165
Vivi1g06880 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 435 IPR027417 -
Vivi1g06880 852 Pfam TIR domain 14 176 IPR000157 GO:0007165
Vivi1g06880 852 Gene3D - 173 332 IPR027417 -
Vivi1g06880 852 SUPERFAMILY "Winged helix" DNA-binding domain 412 519 IPR036390 -
Vivi1g06880 852 Gene3D - 339 425 IPR042197 -
Vivi1g06880 852 ProSiteProfiles TIR domain profile. 12 176 IPR000157 GO:0007165
Vivi1g06880 852 PRINTS Disease resistance protein signature 281 295 - -
Vivi1g06880 852 PRINTS Disease resistance protein signature 210 225 - -
Vivi1g06880 852 PRINTS Disease resistance protein signature 374 388 - -
Vivi1g06880 852 PRINTS Disease resistance protein signature 550 566 - -
Vivi1g06880 852 Gene3D - 11 172 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06880 Vivi-Chr1 163382527 163386705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06880 5 604 WRKY Transcription Factor Family AT4G12020 29.564 1.77e-55 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06880 - - vvo:131644565 1680.61