Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06875 ATGGCCGCCGCAGCTCGTCCCCTTGTCACCGTCCATTCCCTCGAAGGCGATGCCACCACCGATGCCTCCATCACTCTCCCCATCCCCGATGTCATGCGCGCTTCCATCCGCCCTGACATAGTCAACTTCGTTCACTCCAACATCTCCAAAAACAGCCGCCAACCCTACGCCGTCAGCCGCAAAGCCGGTCACCAAACCTCCGCTGAGTCATGGGGAACCGGTCGTGCTGTGTCTCGTATCCCTCGTGTCGCCGGTGGTGGTACTCACCGTGCCGGTCAGGCTGCCTTCGGTAACATGTGTCGTGGTGGACGCATGTTCGCTCCCACCAGGATCTGGCGGAAATGGCACCGGAAGGTCAATGTTAACCAGAAGCGTTACGCTGTTGTCTCAGCTATCGCTGCTTCTGCTGTTCCTTCTCTTGTTCTTGCTCGTGGCCACCGGATCGAGTCGGTTCCTGAGTTTCCTCTTGTTGTTGGTGATTCCGCTGAAGGAGTAGAGAAAACCAAGGAAGCGATCAAGCTTTTGAAGCACATCGGAGCTTTCCCTGACGCCGAGAAAGCGAAGAACAGCCATGGAATCCGTCCAGGAAAAGGTAAGATGCGTAACCGTAGGTATATCTCTCGTAAGGGTCCACTCATTGTTTACGGAACTGAAGGAGCTAAGGCTGTGAAAGCCTTCCGTAACATTCCTGGTGTTGAGATCACCAATGTGGAGAGGCTGAATCTCTTGAAGCTTGCACCTGGTGGACACTTGGGGAGATTTGTGATCTGGACTAAGACTGCTTTTGAGAAACTGGATTCGATTTACGGGTCGTTCGATAAGCCGTCTGAGAAGAAGAAGGGCTATGTTCTTCCTAGGGCGAAGATGACGAACTCGGATCTTACTAGGATTATTAATTCTGATGAGGTGCAGTCTGTTGTTAGACCTGTGAAGAAGGATGTGAAACGGGCAACTTTGAAGAAGAATCCTTTGAAGAATCTTAATGTCATGCTGAGGCTTAATCCTTATGCTAAGACTGCTAAGAGGATGGCTCTGCTTGCTGAAGCTGAAAGGGTTAAGGCTAAGAAGGAGAAGCTTGACAAGAAGAGAAAGAATATCACTAAGGAAGAAGCTACTGCTATCAAGGCGGCAGGAAAAGCTTGGTACAATACTATGGTTTCAGACTCAGATTACACAGAATTTGATAACTTTTCCAAGTGGTTGGGTGTCTCACAGTGA 1218 0.5025 MAAAARPLVTVHSLEGDATTDASITLPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRKWHRKVNVNQKRYAVVSAIAASAVPSLVLARGHRIESVPEFPLVVGDSAEGVEKTKEAIKLLKHIGAFPDAEKAKNSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVIWTKTAFEKLDSIYGSFDKPSEKKKGYVLPRAKMTNSDLTRIINSDEVQSVVRPVKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKNITKEEATAIKAAGKAWYNTMVSDSDYTEFDNFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06875 405 FunFam 60S ribosomal protein L4 3 308 - -
Vivi1g06875 405 Pfam Ribosomal protein L4/L1 family 28 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Vivi1g06875 405 SUPERFAMILY Ribosomal protein L4 8 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vivi1g06875 405 PANTHER 60S RIBOSOMAL PROTEIN L4 4 398 IPR045240 -
Vivi1g06875 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vivi1g06875 405 Coils Coil 342 372 - -
Vivi1g06875 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Vivi1g06875 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06875 Vivi-Chr1 163259447 163262006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06875 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.426 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06875 K02930 - gmx:100779764 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06875 1 163259447 163262006 Vivi1g06875 1 163259447 163262006 ECH