Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi1g06872 | ATGAACTCCAATTCTCACTCAATGTCATCAACACCACCAACACCAACTAGTAACGATGTTTCTGGTGGCAAGAAGGTTAGAAAGCCTTATACTATTACTAAGTCCAGAGAAAGCTGGTCGGATGAAGAACATGATAAGTTCATAGAAGCTCTTCAACTTTTTGATAGGGATTGGAAGAAGATTGAAGATTTTGTAGGTTCTAAAACTGTTATTCAGATTCGAAGCCATGCTCAAAAGTACTTTTTAAAGGTTCAGAAAAATGGAACACTAGCTCATGTTCCTCCTCCTCGTCCTAAGCGGAAAGCTATTCATCCATACCCTCAAAAGGCCACCAAAAATGGGTATGTCACATGGGATGAAACTTCCATGTTGATGAATACTTGTCAGGATGAACTCAATAATCTTCATGGAAATGAAGCTGATATTACTGGATCAAAGGGGATAAGCAACAGTGGTGTTAGTGGTGTTGAGGACTCTAATACAAGGCTCACTGCTTCTCAGATGCCAATGCAAGGGAATCAAAATCCTGCGGTTCATGGTTTGCCGGACTTTGCTGAAGTTTATGGTTTCATTGGAAGTGTTTTTGATCCGGATACAAACGGTCATGTGCAGAAGCTGAAAGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTACTTTTGATCCCATTAAGAAGGCAATGTCAACATACGATGTGAATAATAATAATGTCGCAGTAGGAGTTACTGATGCGAAGAAGCAGACAAATGATGTATCATGTCAAACCACGTAA | 810 | 0.3938 | MNSNSHSMSSTPPTPTSNDVSGGKKVRKPYTITKSRESWSDEEHDKFIEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNGYVTWDETSMLMNTCQDELNNLHGNEADITGSKGISNSGVSGVEDSNTRLTASQMPMQGNQNPAVHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPTFDPIKKAMSTYDVNNNNVAVGVTDAKKQTNDVSCQTT | 269 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi1g06872 | 269 | SUPERFAMILY | Homeodomain-like | 30 | 86 | IPR009057 | - | |
Vivi1g06872 | 269 | Pfam | Myb-like DNA-binding domain | 36 | 81 | IPR001005 | - | |
Vivi1g06872 | 269 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Vivi1g06872 | 269 | SMART | sant | 35 | 83 | IPR001005 | - | |
Vivi1g06872 | 269 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 34 | 83 | IPR006447 | GO:0003677 | |
Vivi1g06872 | 269 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Vivi1g06872 | 269 | PANTHER | SWI/SNF COMPLEX-RELATED | 4 | 229 | - | - | |
Vivi1g06872 | 269 | Gene3D | - | 39 | 86 | - | - | |
Vivi1g06872 | 269 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 31 | 85 | IPR017930 | - | |
Vivi1g06872 | 269 | CDD | SANT | 38 | 81 | IPR001005 | - | |
Vivi1g06872 | 269 | FunFam | protein REVEILLE 6 isoform X1 | 38 | 86 | - | - | |
Vivi1g06872 | 269 | ProSiteProfiles | SANT domain profile. | 34 | 87 | IPR017884 | - | |
Vivi1g06872 | 269 | ProSiteProfiles | Myb-like domain profile. | 31 | 81 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi1g06872 | Vivi-Chr1 | 163240980 | 163243780 | Tandem |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Vivi1g06872 | Myb_DNA-binding | 3.8e-11 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi1g06872 | - | - | vra:106754423 | 391.349 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vivi1g06872 | 1 | 163240980 | 163243780 | Vivi1g06872 | 1 | 163240980 | 163243780 | ECH |