Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06872 ATGAACTCCAATTCTCACTCAATGTCATCAACACCACCAACACCAACTAGTAACGATGTTTCTGGTGGCAAGAAGGTTAGAAAGCCTTATACTATTACTAAGTCCAGAGAAAGCTGGTCGGATGAAGAACATGATAAGTTCATAGAAGCTCTTCAACTTTTTGATAGGGATTGGAAGAAGATTGAAGATTTTGTAGGTTCTAAAACTGTTATTCAGATTCGAAGCCATGCTCAAAAGTACTTTTTAAAGGTTCAGAAAAATGGAACACTAGCTCATGTTCCTCCTCCTCGTCCTAAGCGGAAAGCTATTCATCCATACCCTCAAAAGGCCACCAAAAATGGGTATGTCACATGGGATGAAACTTCCATGTTGATGAATACTTGTCAGGATGAACTCAATAATCTTCATGGAAATGAAGCTGATATTACTGGATCAAAGGGGATAAGCAACAGTGGTGTTAGTGGTGTTGAGGACTCTAATACAAGGCTCACTGCTTCTCAGATGCCAATGCAAGGGAATCAAAATCCTGCGGTTCATGGTTTGCCGGACTTTGCTGAAGTTTATGGTTTCATTGGAAGTGTTTTTGATCCGGATACAAACGGTCATGTGCAGAAGCTGAAAGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTACTTTTGATCCCATTAAGAAGGCAATGTCAACATACGATGTGAATAATAATAATGTCGCAGTAGGAGTTACTGATGCGAAGAAGCAGACAAATGATGTATCATGTCAAACCACGTAA 810 0.3938 MNSNSHSMSSTPPTPTSNDVSGGKKVRKPYTITKSRESWSDEEHDKFIEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNGYVTWDETSMLMNTCQDELNNLHGNEADITGSKGISNSGVSGVEDSNTRLTASQMPMQGNQNPAVHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPTFDPIKKAMSTYDVNNNNVAVGVTDAKKQTNDVSCQTT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06872 269 SUPERFAMILY Homeodomain-like 30 86 IPR009057 -
Vivi1g06872 269 Pfam Myb-like DNA-binding domain 36 81 IPR001005 -
Vivi1g06872 269 MobiDBLite consensus disorder prediction 1 41 - -
Vivi1g06872 269 SMART sant 35 83 IPR001005 -
Vivi1g06872 269 NCBIfam myb-like DNA-binding domain, SHAQKYF class 34 83 IPR006447 GO:0003677
Vivi1g06872 269 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g06872 269 PANTHER SWI/SNF COMPLEX-RELATED 4 229 - -
Vivi1g06872 269 Gene3D - 39 86 - -
Vivi1g06872 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 85 IPR017930 -
Vivi1g06872 269 CDD SANT 38 81 IPR001005 -
Vivi1g06872 269 FunFam protein REVEILLE 6 isoform X1 38 86 - -
Vivi1g06872 269 ProSiteProfiles SANT domain profile. 34 87 IPR017884 -
Vivi1g06872 269 ProSiteProfiles Myb-like domain profile. 31 81 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06872 Vivi-Chr1 163240980 163243780 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi1g06872 Myb_DNA-binding 3.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06872 - - vra:106754423 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06872 1 163240980 163243780 Vivi1g06872 1 163240980 163243780 ECH