Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06871 ATGAACTCCAATTCTCACTCAATGTCATCAACACCACCAACACCAACTAGTAACGATGTTTCTGGTGGCAAGAAGGTTAGAAAGCCTTATACTATTACTAAGTCCAGAGAAAGCTGGTCGGATGAAGAACATGATAAGTTCATAGAAGCTCTTCAACTTTTTGATAGGGATTGGAAGAAGATTGAAGATTTTGTAGGTTCTAAAACTGTTATTCAGGTAATTCATTATTCAATCCATTTCTTTTATGTGTCTTTAATTATTATTCTATTCACTTACTTTAATAATTTATTTCAGATTCGAAGCCATGCTCAAAAGTACTTTTTAAAGGTTCAGAAAAATGGAACACTAGCTCATGTTCCTCCTCCTCGTCCTAAGCGGAAAGCTATTCATCCATACCCTCAAAAGGCCACCAAAAATGTTTTGGTGCCACTACCAGCATCCATTGCTTATGGATCTTCTTCAAATAACCTTTTACCTGCAGGGTATGTCACATGGGATGAAACTTCCATGTTGATGAATACTTGTCAGGATGAACTCAATAATCTTCATGGAAATGAAGCTGATATTACTGGATCAAAGGGGATAAGCAACAGTGGTGTTAGTGGTGTTGAGGACTCTAATACAAGGCTCACTGCTTCTCAGATGCCAATGCAAGGGAATCAAAATCCTGCGGTTCATGGTTTGCCGGACTTTGCTGAAGTTTATGGTTTCATTGGAAGTGTTTTTGATCCGGATACAAACGGTCATGTGCAGAAGCTGAAAGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTACTTTTGATCCCATTAAGGCAATGTCAACATACGATGTGAATAATAATAATGTCGCAGTAGGAGTTACTGATGCGAAGAAGCAGACAAATGATGTATCATGTCAAACCACGTAA 948 0.3787 MNSNSHSMSSTPPTPTSNDVSGGKKVRKPYTITKSRESWSDEEHDKFIEALQLFDRDWKKIEDFVGSKTVIQVIHYSIHFFYVSLIIILFTYFNNLFQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNVLVPLPASIAYGSSSNNLLPAGYVTWDETSMLMNTCQDELNNLHGNEADITGSKGISNSGVSGVEDSNTRLTASQMPMQGNQNPAVHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPTFDPIKAMSTYDVNNNNVAVGVTDAKKQTNDVSCQTT 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06871 315 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g06871 315 MobiDBLite consensus disorder prediction 1 37 - -
Vivi1g06871 315 Pfam Myb-like DNA-binding domain 36 76 IPR001005 -
Vivi1g06871 315 Gene3D - 39 81 - -
Vivi1g06871 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 34 73 IPR006447 GO:0003677
Vivi1g06871 315 CDD SANT 38 76 IPR001005 -
Vivi1g06871 315 ProSiteProfiles SANT domain profile. 34 76 IPR017884 -
Vivi1g06871 315 SUPERFAMILY Homeodomain-like 25 76 IPR009057 -
Vivi1g06871 315 PANTHER SWI/SNF COMPLEX-RELATED 4 276 - -
Vivi1g06871 315 SMART sant 35 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06871 Vivi-Chr1 163240979 163243780 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi1g06871 Myb_DNA-binding 5.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06871 - - vra:106754423 404.831