Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06860 ATGCCTCCGAAGCAATCAAAAGCTGATGTAGCGAAGAAGCAGAAGGTTGTAGAAGACAAAACTTTCGGTCTCAAGAATAAGAACAAGAGCAAAGCAGTTCAGAAATATGTTCAGAATCTTAAGTCTTCCGTGCAACCCAAAACCGACCCCAAAGTCGATGCAAAGAAAAAGAGGGAGGAAGAGAAGGCTAAAGAGAAGGAGCTGAATGATTTGTTCAAAATTGCTGTCAGTCAGCCTAAAGTCCCAGCCGGTGTTGATCCCAAGTCTATATTATGTGAGTTTTTTAAAGTGGGTCAGTGTGCTAAGGGCTTTAAATGCAAATTTTCGCATGATTTGAATGTTCAGAGGAAAGGAGAGAAGATTGACATATACAGTGATAAGCGCGATGATGATACAATGGAGGAATGGGATCAAGCGACATTGGAGAAAGTGGTGGAGTCGAAGCAAAATGAGTATAATCAGAACAAACCAACTGACATTGTATGTAAACACTTTTTGGATGCGGTTGAGAGGAAGCAATATGGTTGGTTTTGGGCATGTCCCAATGGCGGTAAGAATTGTATCTATAGACATGCACTTCCACCTGGGTATATTTTAAAATCCCAAATGAAGGCTTTGTTGGAGGAAGAATCTGATAAAATGCCTATTGAGGAAGAGATTGAAAAGCAGCGTGCCCAAGTGAAAACTACAACCCCTATGTCTACTGAGTTGTTCCTCCAATGGAAGAAGAAAAAGATGGATGAGAGAGAGGCTAGTTTGGCTGCCCAACAGGCAGAGAGGGCTAAGAATGACCGCATGAGTGGGCGTGAGCTGTTTCTGTCAGATGCTAGCTTGTTTGTGGATGATGCTGAAGCATATGATAAGTACCATAGACAACCTGAATCTGATGAAACTGAACAGAATGGGTCTGGGAGTGCCGCTAATAATGGTCCTAGCACCTCAGCAACAGGTGCCGCTGATGATGAACTTCCTGATGATATCGACGATGATGATGAACTGGACCTGGATGAGTTGGATGAATTGGAAGCTAGTTTAGCCAAGACATCAATCCAAATTAAGGAAGCTGAAGCTTAA 1074 0.4264 MPPKQSKADVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPKTDPKVDAKKKREEEKAKEKELNDLFKIAVSQPKVPAGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDDDTMEEWDQATLEKVVESKQNEYNQNKPTDIVCKHFLDAVERKQYGWFWACPNGGKNCIYRHALPPGYILKSQMKALLEEESDKMPIEEEIEKQRAQVKTTTPMSTELFLQWKKKKMDEREASLAAQQAERAKNDRMSGRELFLSDASLFVDDAEAYDKYHRQPESDETEQNGSGSAANNGPSTSATGAADDELPDDIDDDDELDLDELDELEASLAKTSIQIKEAEA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06860 357 SMART c3hfinal6 156 193 IPR000571 GO:0046872
Vivi1g06860 357 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Vivi1g06860 357 SUPERFAMILY CCCH zinc finger 86 111 IPR036855 GO:0046872
Vivi1g06860 357 MobiDBLite consensus disorder prediction 298 316 - -
Vivi1g06860 357 Pfam DRG Family Regulatory Proteins, Tma46 214 298 IPR032378 -
Vivi1g06860 357 Gene3D - 203 277 - -
Vivi1g06860 357 MobiDBLite consensus disorder prediction 48 63 - -
Vivi1g06860 357 MobiDBLite consensus disorder prediction 287 334 - -
Vivi1g06860 357 Coils Coil 338 357 - -
Vivi1g06860 357 Coils Coil 51 71 - -
Vivi1g06860 357 ProSiteProfiles Zinc finger C3H1-type profile. 156 194 IPR000571 GO:0046872
Vivi1g06860 357 Gene3D - 85 202 - -
Vivi1g06860 357 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Vivi1g06860 357 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 355 - -
Vivi1g06860 357 MobiDBLite consensus disorder prediction 38 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06860 Vivi-Chr1 162487849 162491879 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g06860 DFRP_C 4.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06860 - - gmx:100783113 567.77