Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06856 ATGACAAGGGGTAACGAGATATGTGTTGATGGCGACAGTAAAGAACTTACTCAGTGTTTGCGGGATGGGAAGAACAGCTTAAAAAAAGGAGTTGCTGGTGAGGGTAATGAAGTGGAATGTAATGGAGTAGCTGAAGAAGTTAAGGTTGGAGAGGGAGGGAATGGAGAATCCTCTTCTGTCCAGCAGCAAGTACCGCAGTATCAGTCTCAAGGCGCAATTATTTGTTGGGAGAGGTTTTTGCATATTAGATCCCTTAAAGTCTTGCTTGTGGAGTATGATGATTGTACTCGCCATATTGTCACTGCATTGCTCCGCAATTGCAGTTATGAAGTTATTGAAGCAGCAAATGGATTGCAAGCTTGGAAGATTTTGGAGGATTTAACTAATCATATTGATATTATTTTAACTGAGGTGGCAATGCCTGGCTTATCAGGCATTGCTCTTCTATACAAGATTATGGGCCACACAACTCGGAAAAATGTTCCAGTGATTATGATGTCATCTCTTGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTCGATTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGTCATAGTTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACTCAGAAATCTGTGAAATCAAAGAGTCTTGAGAAGTTTGACAACAATTCGGGAAGCAATGACGAGCAAGATAATGAAATTTTAGGCTTAAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGTTCCTGGACCAAACGAGCTGTAGAAGTTGACAGTCCTAAATCAGACTCTCAGTGGGAACAGATAGCTGAGTGTCCTGACAGCACTTGTGCTCAAGTTGTTCATTCCAATGCTGAAATATGCAGGGGCAAGATGGTTCCTCCAGTCATAAAGGAGTGTCCAGAGCAAAAGGAACAAATAGGTTCAAAACATATCAACACACTTGATGTAGGCCTCTCTAAATTCAATGAGCAAATTATTAGAGGACATCAGGAGCTTAATTGTGAGAATCAATCTGGCAAGCTAAGATGCAAAGGGCTTTCATTATCTGATGGTGTTACTAGCACTTCTGATTCTCGAATGCGAAGTGGAGAAATTGAAGCTCTAAATAGAATACCCAAGTCCTCAGATATTTACAACAAAGGTACTAATAATGACGAGGAGTTGCCATCTCTTGAGCTCAGTTTAAAGAGGCCTAGAGAAGTTAAAGAAGTTGGTACTACAAGTCAGGATGAAAGGAATGTTTTAAGACATTCTGATCTGTCTGCTTTCTCAAAGTACAATGCAGCCCTTAATGCTAAGAAGTCTCCTACGAGATGTGTTGGAAGTAACTCTCCACATAATAACAGCTTAGAAGTTACAAAGAAAGATTCCTCTCTTGATGTTCAATCTCATTCTAGTGGCAATCCTCCTAACCAGAACTCAAATGGTGGTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCATTTACCAAGTCTGCAGTTATAAGTGAGCCAGCGGTGGCATCAACAACCAAATTTGCGTACAAAACATCTGCTTTCCAGCCCATAAAGAGCAGCCTCATGTGTACCTCTCAACAGGTGGTCTTGCATAATAATGAAGATACGACAGCAGCAATGCTGGCACCACCTAAAATTGACACTGATAAGGTTTCTGTTACTCAGGATTTTCATCACCATTATGTAAACCACAACAATGTTGCAAACATGCAGCATCAGTTGCCACCTGAGAATGATGCTGAGTCATTTAAGAAAATGACGGCTGTTTCTCCATACTGCGGTGGGTCATCAAATGTGGTTGAAGTGCTAGTTGAAGGTAATATGGGAAATTACAGTATCAATAGAAGTGCTTCAGGCAGCAACATTGAAAGTAATGGACAAAATGGGAGCAGCACTGCAATTAATACTGGAGGGACAAACTTAGAAAGCAACAATGGACTAGCTGGGAATAGTGGTAGTGGTGATGCTAGTGCGAATGGAAGTGCCATCAGAATAGATCAAAACAAGAATTCTCGAAGGGAAGCAGCACTAACAAAATTTCGTCAAAAAAGAAAGGAGAGAAAAGAGAAGTGCTTTCATAAACAGGTTCGATATGAGAGCAGGAAGAAATTAGCTGAACAACGACTACGATATCGTGGACAATTTGTGCGAAAGTCTTCAAACAATGATGCCGGTGAGGCAACAGATAGTTGA 2247 0.4099 MTRGNEICVDGDSKELTQCLRDGKNSLKKGVAGEGNEVECNGVAEEVKVGEGGNGESSSVQQQVPQYQSQGAIICWERFLHIRSLKVLLVEYDDCTRHIVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDIILTEVAMPGLSGIALLYKIMGHTTRKNVPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKFDNNSGSNDEQDNEILGLNNGDGSDNGSGTQSSWTKRAVEVDSPKSDSQWEQIAECPDSTCAQVVHSNAEICRGKMVPPVIKECPEQKEQIGSKHINTLDVGLSKFNEQIIRGHQELNCENQSGKLRCKGLSLSDGVTSTSDSRMRSGEIEALNRIPKSSDIYNKGTNNDEELPSLELSLKRPREVKEVGTTSQDERNVLRHSDLSAFSKYNAALNAKKSPTRCVGSNSPHNNSLEVTKKDSSLDVQSHSSGNPPNQNSNGGSNNIDMGSTTNNAFTKSAVISEPAVASTTKFAYKTSAFQPIKSSLMCTSQQVVLHNNEDTTAAMLAPPKIDTDKVSVTQDFHHHYVNHNNVANMQHQLPPENDAESFKKMTAVSPYCGGSSNVVEVLVEGNMGNYSINRSASGSNIESNGQNGSSTAINTGGTNLESNNGLAGNSGSGDASANGSAIRIDQNKNSRREAALTKFRQKRKERKEKCFHKQVRYESRKKLAEQRLRYRGQFVRKSSNNDAGEATDS 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06856 748 MobiDBLite consensus disorder prediction 636 684 - -
Vivi1g06856 748 Pfam CCT motif 691 736 IPR010402 GO:0005515
Vivi1g06856 748 PANTHER TWO-COMPONENT RESPONSE REGULATOR 85 277 IPR045279 GO:0009736
Vivi1g06856 748 MobiDBLite consensus disorder prediction 209 281 - -
Vivi1g06856 748 SMART REC_2 85 200 IPR001789 GO:0000160
Vivi1g06856 748 SUPERFAMILY CheY-like 83 209 IPR011006 -
Vivi1g06856 748 Gene3D - 84 257 - -
Vivi1g06856 748 FunFam Two-component response regulator-like PRR37 85 243 - -
Vivi1g06856 748 MobiDBLite consensus disorder prediction 451 503 - -
Vivi1g06856 748 MobiDBLite consensus disorder prediction 209 226 - -
Vivi1g06856 748 MobiDBLite consensus disorder prediction 240 281 - -
Vivi1g06856 748 ProSiteProfiles CCT domain profile. 694 736 IPR010402 GO:0005515
Vivi1g06856 748 MobiDBLite consensus disorder prediction 636 691 - -
Vivi1g06856 748 Pfam Response regulator receiver domain 87 198 IPR001789 GO:0000160
Vivi1g06856 748 ProSiteProfiles Response regulatory domain profile. 86 204 IPR001789 GO:0000160
Vivi1g06856 748 CDD psREC_PRR 87 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06856 Vivi-Chr1 162006222 162027078 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06856 163 738 Response Regulator Gene Family AT5G02810 44.800 1.11e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vivi1g06856 Response_reg 8.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06856 K12129 - gmx:100796933 1050.81