Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06843 ATGGCCACCACTGTAGGCGCGCAACCAATTCGACCTCCTCCGTTATCTTCAACTTCCGAACAACCGCCTCTTTTTGACGGAACCACCAGGTTGTACACCAGTTATATTTGTCCCTTTGCGCAACGTGTATGGATCGCTAGGAATTATAAGGGACTTCAAGACAAGATCCAATTGGTTCCTTTTGATCTTCAAAATAGACCTGCATGGTATAAGGAAAAAGTATACCCTGAAAATAAGGTGCCATCTTTGGAGCACAATGGCAAGATATTGGGAGAAAGTCTTGATTTGATCAAATATCTTGATGCTAACTTTGAAGGAACGCCTCTCTTTCCCACCGATCCCGCCAAGAAAGAGTTCGGTGAACAGTTGTTATCCCAGGTTGATACCTTTGTTAAAGACTTTTTCAATGCATTAAGAGGGGATACTGTGCAACAATCCCATCCTGCTTTTGGATTCTTGGAGAATGCTCTTGGTAAATTTGATGATGGACCATTCCTGCTGGGTCAATTCAGTTCGGTGGATATTGCCTACATTCCTTTTGTTGAAAGATTCCATGTTGTTCTTGTTGAGGCGTTCAAGCACGACGCCACAGAAGGAAAACCTAATCTTGCAAAATGGATTGAGGAGTTGAACAAGATTGATGCTTATACACAAACAAGAGAGGATCCTCAGGAAATCGTCGATCTTGTCAAGAAACGTTTTATGCCTCAGAAGTGA 717 0.4254 MATTVGAQPIRPPPLSSTSEQPPLFDGTTRLYTSYICPFAQRVWIARNYKGLQDKIQLVPFDLQNRPAWYKEKVYPENKVPSLEHNGKILGESLDLIKYLDANFEGTPLFPTDPAKKEFGEQLLSQVDTFVKDFFNALRGDTVQQSHPAFGFLENALGKFDDGPFLLGQFSSVDIAYIPFVERFHVVLVEAFKHDATEGKPNLAKWIEELNKIDAYTQTREDPQEIVDLVKKRFMPQK 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06843 238 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 27 108 IPR004045 -
Vivi1g06843 238 Pfam Glutathione S-transferase, N-terminal domain 31 107 IPR004045 -
Vivi1g06843 238 FunFam Lambda class glutathione S-transferase 106 237 - -
Vivi1g06843 238 Pfam Glutathione S-transferase, C-terminal domain 143 208 - -
Vivi1g06843 238 Gene3D Glutaredoxin 2 105 - -
Vivi1g06843 238 FunFam Glutathione S-transferase L2, chloroplastic 2 105 - -
Vivi1g06843 238 PRINTS Omega-class glutathione S-transferase signature 27 42 IPR005442 GO:0004364|GO:0005737
Vivi1g06843 238 PRINTS Omega-class glutathione S-transferase signature 104 118 IPR005442 GO:0004364|GO:0005737
Vivi1g06843 238 SFLD Main (cytGST) 30 211 - -
Vivi1g06843 238 SFLD Glutathione Transferase (cytosolic) 30 211 IPR040079 -
Vivi1g06843 238 PANTHER GLUTATHIONE S-TRANSFERASE L1 8 235 IPR044629 GO:0004364
Vivi1g06843 238 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1g06843 238 SUPERFAMILY Thioredoxin-like 20 109 IPR036249 -
Vivi1g06843 238 Gene3D - 106 237 - -
Vivi1g06843 238 SUPERFAMILY GST C-terminal domain-like 104 234 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06843 Vivi-Chr1 161852872 161855875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06843 11 235 Glutathione S-transferase Gene Family AT5G02790 68.000 1.10e-114 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06843 K00799 - gmx:547597 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03701 6 131722727 131725017 Vivi1g06843 1 161852872 161855875 ECH
Vivi1g06843 1 161852872 161855875 Vivi1g06843 1 161852872 161855875 ECH
Vivi6g03701 6 131722727 131725017 Vivi1g06843 1 161852872 161855875 PCT