Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06838 ATGGTGAGATCTTGCTGGAAGCCTGCTGTGGATGGTGATGAGGGAGATGGGAGTGGAAGTGGGAGTGGTGGGAGAGTTGATGGATTGTTGTGGTATAAAGATTTAGGGAACCATGTTTATGGTGATTTTTCAATGGCTGTGATTCAAGCTAATAGTTCTTTGGAGGATAGAAGTGAGTTTGAGTCTGGTCCTTTGAGTTTTAACCATTTTGGTCCTCAAGGAACTTTTGTTGGTGTTTATGATGGTCATGGTGGAGCTGAGGCTTCTCAATTTGTCAGTGATAACCTTTTCTGCAATCTCAAAAGGCTTGCAGCTGAAAACCAAGGCTTATCAGAGAATGTTATCAAAAGAGCATTTTCAGCAACAGAAGAAAGTTTTCTATCACTTGTGAAGAAACAGTGGCTAAGTAAGCCACATATTGCATCAGCAGGTACATGTTGTTTGGTTGGGATAATTTGCAATGGAATGATATATATTGCAAATTCCGGTGACTCGAGGGTGGTGTTGGGAAGATTAGAGAGAGCAAGAAGGGAAGCATCAGCTATACAGTTATCTACAGAACATAATGTTAATCTTGAAAGAGTTAGAGATGAACTTAGATTAAAGCATCCTTTTGATTCAGAAATTGTGGTTCTGAGACACAATGTTTGGCGCGTGAAAGGCCTCATTCAGGTTTCGCGGTCAATCGGGGATGCGTATTTGAAGAAAGCTGAATTCAATAGGGAGCCTCTACCGGCTAAGTTTAGGCTAGCTGAAACATTTTTCAAGCCAATTCTGAGTTGTGAGCCATCAATTTCATCTCACAAACTTCATCCTGATGACCAGTTTCTCATATTTGCTTCTGATGGATTATGGGAGCATCTTAGCAACCAAGAGGCTGTTCATATAGTCAGCAATAATGCACCTAATGGAATTGCAAGAAGACTTGTGAAGGCAGCGCTAAGAGAAGCAGCTAAGAAGCGAGAGATGAGACTAGCAGACCTACAAAAGATTGAACAAGGAACAAGGAGACACTTTCATGATGATATAACAGTGATTGTTGTGTTTCTTAATCACAAAATGATTGATAATAGTTCTCTTTGTGGTTCTCCTCTTTCAATTAAGGGAGGTGGATCTGGTCATCATTAA 1128 0.4051 MVRSCWKPAVDGDEGDGSGSGSGGRVDGLLWYKDLGNHVYGDFSMAVIQANSSLEDRSEFESGPLSFNHFGPQGTFVGVYDGHGGAEASQFVSDNLFCNLKRLAAENQGLSENVIKRAFSATEESFLSLVKKQWLSKPHIASAGTCCLVGIICNGMIYIANSGDSRVVLGRLERARREASAIQLSTEHNVNLERVRDELRLKHPFDSEIVVLRHNVWRVKGLIQVSRSIGDAYLKKAEFNREPLPAKFRLAETFFKPILSCEPSISSHKLHPDDQFLIFASDGLWEHLSNQEAVHIVSNNAPNGIARRLVKAALREAAKKREMRLADLQKIEQGTRRHFHDDITVIVVFLNHKMIDNSSLCGSPLSIKGGGSGHH 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06838 375 SMART PP2C_4 36 348 IPR001932 -
Vivi1g06838 375 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g06838 375 Gene3D - 33 359 IPR036457 -
Vivi1g06838 375 ProSiteProfiles PPM-type phosphatase domain profile. 39 350 IPR001932 -
Vivi1g06838 375 FunFam Phosphatase 2C family protein 31 360 - -
Vivi1g06838 375 Pfam Protein phosphatase 2C 74 319 IPR001932 -
Vivi1g06838 375 CDD PP2Cc 40 350 IPR001932 -
Vivi1g06838 375 PANTHER PROTEIN PHOSPHATASE 32 348 IPR015655 GO:0004722|GO:0006470
Vivi1g06838 375 ProSitePatterns PPM-type phosphatase domain signature. 76 84 IPR000222 GO:0043169
Vivi1g06838 375 SUPERFAMILY PP2C-like 52 351 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06838 Vivi-Chr1 161733797 161736500 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06838 1 371 PP2C-type Phosphatase Gene Family AT3G12620 66.935 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06838 K01102 - gmx:100814123 620.542