Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi1g06824 | ATGGGTTGGATTCCATGTTCTGGAAGTTCCAACACTAAGAAGAAGATTAAGAAGAAATTGGAGGAAGAGCAAGATATGCGGGATTCGATCAAAGCCAACCCGGGGAAATTAAAGAAGAACTCATCTGTGAATTCCAGAAGTTCCTCTAAAAATGGCGACTCTGAACACATTGCCGCACAAACGTTCCCTTTCCGTGAGTTAGCAGTTGCTACTAGAAATTTTAGAGCAGAATGTCTTCTGGGCGAGGGAGGCTTTGGCAGAGTGTACAAAGGGCATTTGGAATCTGTTAACCAGACCGTTGCAATTAAGCAACTTGACCGAAACGGGCTACAGGGGAATAGAGAATTTCTTGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTACGAATATATGCCATTAGGATCCTTGGAAGACCACTTACATGATGTTTCTCTTGGCAAGAAACGACTTGACTGGAACACGAGAATGAAAATAGCTGCCGGGGCAGCAAAAGGGTTGGAATATCTACATGATAAAGCTAACCCTCCCGTCATATACCGAGATTTAAAATGCTCCAACATTTTGCTTGGTGAAGGGTATCATCCTAAGTTATCTGATTTTGGTTTGGCTAAAGTTGGCCCCGTCGGGGAAAACACCCATGTATCAACAAGGGTTATGGGAACCTACGGATATTGTGCTCCAGAGTATGCAATGACAGGTCAACTAACTCTGAAATCAGATGTTTATAGTTTTGGTGTCGTTCTTCTAGAAATAATTACCGGAAGGAAAGCGATTGACAATTCAAAATGTGCAGCCGAGCAGAATCTTGTTGCATGGGCTAGGCCTTTGTTTAAAGATCGAAGAAAATTCACGCAAATGGCTGATCCAATGCTGCAAGGCCAGTATCCTTCAAGAGGGATATACCAAGCCCTTGCAGTTGCAGCAATGTGTGTTCAGGAGCAGGCGAATATGCGTCCAGTTATAGCCGATGTTGTGACAGCTTTGAGCTACCTTGCTTCTCAAAACTTTAAGCCGAATACGCAGACGGTACAAAGCTCTCGCCTCGGTTCTGGTACTCCTCCTCGAAGCAGGAGGGGAGTTTGA | 1143 | 0.4409 | MGWIPCSGSSNTKKKIKKKLEEEQDMRDSIKANPGKLKKNSSVNSRSSSKNGDSEHIAAQTFPFRELAVATRNFRAECLLGEGGFGRVYKGHLESVNQTVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDVSLGKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKCAAEQNLVAWARPLFKDRRKFTQMADPMLQGQYPSRGIYQALAVAAMCVQEQANMRPVIADVVTALSYLASQNFKPNTQTVQSSRLGSGTPPRSRRGV | 380 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi1g06824 | 380 | FunFam | Serine/threonine-protein kinase PBS1 | 46 | 150 | - | - | |
Vivi1g06824 | 380 | Coils | Coil | 13 | 33 | - | - | |
Vivi1g06824 | 380 | MobiDBLite | consensus disorder prediction | 35 | 55 | - | - | |
Vivi1g06824 | 380 | SMART | serkin_6 | 74 | 351 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vivi1g06824 | 380 | ProSitePatterns | Protein kinases ATP-binding region signature. | 80 | 103 | IPR017441 | GO:0005524 | |
Vivi1g06824 | 380 | ProSiteProfiles | Protein kinase domain profile. | 74 | 351 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vivi1g06824 | 380 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 197 | 209 | IPR008271 | GO:0004672|GO:0006468 | |
Vivi1g06824 | 380 | Gene3D | Phosphorylase Kinase; domain 1 | 44 | 150 | - | - | |
Vivi1g06824 | 380 | MobiDBLite | consensus disorder prediction | 14 | 34 | - | - | |
Vivi1g06824 | 380 | FunFam | Serine/threonine-protein kinase PBS1 | 151 | 366 | - | - | |
Vivi1g06824 | 380 | PANTHER | OS07G0668900 PROTEIN | 21 | 360 | - | - | |
Vivi1g06824 | 380 | MobiDBLite | consensus disorder prediction | 361 | 380 | - | - | |
Vivi1g06824 | 380 | Gene3D | Transferase(Phosphotransferase) domain 1 | 151 | 369 | - | - | |
Vivi1g06824 | 380 | CDD | STKc_IRAK | 80 | 348 | - | - | |
Vivi1g06824 | 380 | Pfam | Protein tyrosine and serine/threonine kinase | 78 | 347 | IPR001245 | GO:0004672|GO:0006468 | |
Vivi1g06824 | 380 | SUPERFAMILY | Protein kinase-like (PK-like) | 57 | 346 | IPR011009 | - | |
Vivi1g06824 | 380 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi1g06824 | Vivi-Chr1 | 161437487 | 161440562 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi1g06824 | 27 | 353 | Glycoside Hydrolase | AT3G07070 | 66.364 | 2.83e-162 | 459 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIIa-1 | Vivi1g06824 | PK_Tyr_Ser-Thr | 9.4e-47 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi1g06824 | - | - | gmx:100776041 | 659.833 |