Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06811 ATGTGGTACATGTACATAAAAAGCCTCATTCTCATTCATCATCATCTCCACCCTTCACACAACACTTTCACACTGTCAATACAAAGCCAAACTCCAAACCAATTATTCAAGGCCATGGAAGAAACAACATCAACCATCATGGCAGCACTTTCATCTCTCCCTTCTCACCACCTCACAAATCTCACTAACTCCATTCTCTCCTCCACCCGCCGCCACCACCACCGCCTCACTCTCCTCCTCTCTTCCCCGTCTCTCTTCTCCTTAACCCTCCGTCATCTCCACACACTCTCTCTCCCCCAAAAAACTCTACTCATTTCACGACACCTCCTTTCCTCTCTCCACCTTCTCACCCAATCAAAAACCTCCACGTCACCTCTTCCACCTCCTGTTTCAACCTCCATGAGAGACCGTGAACTCGACGCGGTCTTGCTCCTTCTCTTACTATGCGAAACACATAAACACAATCCGGAAGCTCTAAACGCACCGTTTAGCAACTGGAGATTGAATTTAAGCAAAATCTTCTCCGATACATTGTTAACGCTTTCTCACTCTTCCGCACCGCCGCTTGGAGCTTGTTTAGGATCTGTTTTGATTCCGTTTATCGAAACAGTGAGTCGATGTTGGAGACTGGTGGATGCTTTAGCCTGCGACGGTGGCGGTGATGATGGAAAGGGAGATAAGGAAGTGGCGGCTTCGGCGGCGACGGTGGTTTCTTTGCCGGCAGTTGGAGTGAGAGTTGGCGGGAGAGAGTGTGTGATATGTAAAGATGAGATGCGAGTGGGGAGAGACGTGTGTGAGTTGCCATGTCAGCATTTGTTTCATTGGATGTGTATTTTGCCTTGGCTGGGAAAGAGGAACACGTGTCCTTGTTGCAGGTTTCGCTTACCGTCCGATGATGTATTTGGAGAGATCCAACGGCTGTGGGAAGTCTTGGTTAAAATTGGTGCTAAACAGTAA 957 0.4838 MWYMYIKSLILIHHHLHPSHNTFTLSIQSQTPNQLFKAMEETTSTIMAALSSLPSHHLTNLTNSILSSTRRHHHRLTLLLSSPSLFSLTLRHLHTLSLPQKTLLISRHLLSSLHLLTQSKTSTSPLPPPVSTSMRDRELDAVLLLLLLCETHKHNPEALNAPFSNWRLNLSKIFSDTLLTLSHSSAPPLGACLGSVLIPFIETVSRCWRLVDALACDGGGDDGKGDKEVAASAATVVSLPAVGVRVGGRECVICKDEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKIGAKQ 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06811 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 37 296 - -
Vivi1g06811 318 SMART ring_2 251 291 IPR001841 -
Vivi1g06811 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 298 IPR013083 -
Vivi1g06811 318 ProSiteProfiles Zinc finger RING-type profile. 251 292 IPR001841 -
Vivi1g06811 318 CDD RING-H2_PA-TM-RING 250 292 - -
Vivi1g06811 318 SUPERFAMILY RING/U-box 246 297 - -
Vivi1g06811 318 Pfam Ring finger domain 250 292 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06811 Vivi-Chr1 160864943 160866952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06811 40 313 C3H Transcription Factor Family AT5G02750 51.930 2.80e-80 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06811 K11982 - gmx:100818800 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06811 1 160864943 160866952 Vivi1g06811 1 160864943 160866952 ECH